Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC18B1 (solute carrier family 18 member B1)

Identity

Alias_namesC6orf192
chromosome 6 open reading frame 192
solute carrier family 18, subfamily B, member 1
Alias_symbol (synonym)dJ55C23.6
Other alias
HGNC (Hugo) SLC18B1
LocusID (NCBI) 116843
Atlas_Id 73310
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132769368 and ends at 132798608 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC18B1   21573
Cards
Entrez_Gene (NCBI)SLC18B1  116843  solute carrier family 18 member B1
AliasesC6orf192; dJ55C23.6
GeneCards (Weizmann)SLC18B1
Ensembl hg19 (Hinxton)ENSG00000146409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146409 [Gene_View]  ENSG00000146409 [Sequence]  chr6:132769368-132798608 [Contig_View]  SLC18B1 [Vega]
ICGC DataPortalENSG00000146409
TCGA cBioPortalSLC18B1
AceView (NCBI)SLC18B1
Genatlas (Paris)SLC18B1
WikiGenes116843
SOURCE (Princeton)SLC18B1
Genetics Home Reference (NIH)SLC18B1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC18B1  -     chr6:132769368-132798608 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC18B1  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblSLC18B1 - 6q23.2 [CytoView hg19]  SLC18B1 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBISLC18B1 [Mapview hg19]  SLC18B1 [Mapview hg38]
OMIM613361   
Gene and transcription
Genbank (Entrez)AJ420537 AK124442 AK289918 AK293853 BC069567
RefSeq transcript (Entrez)NM_052831
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC18B1
Cluster EST : UnigeneHs.347144 [ NCBI ]
CGAP (NCI)Hs.347144
Alternative Splicing GalleryENSG00000146409
Gene ExpressionSLC18B1 [ NCBI-GEO ]   SLC18B1 [ EBI - ARRAY_EXPRESS ]   SLC18B1 [ SEEK ]   SLC18B1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC18B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116843
GTEX Portal (Tissue expression)SLC18B1
Human Protein AtlasENSG00000146409-SLC18B1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NT16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NT16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NT16
Splice isoforms : SwissVarQ6NT16
PhosPhoSitePlusQ6NT16
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC18B1
DMDM Disease mutations116843
Blocks (Seattle)SLC18B1
SuperfamilyQ6NT16
Human Protein Atlas [tissue]ENSG00000146409-SLC18B1 [tissue]
Peptide AtlasQ6NT16
HPRD12869
IPIIPI00074045   IPI00922827   IPI00515000   
Protein Interaction databases
DIP (DOE-UCLA)Q6NT16
IntAct (EBI)Q6NT16
FunCoupENSG00000146409
BioGRIDSLC18B1
STRING (EMBL)SLC18B1
ZODIACSLC18B1
Ontologies - Pathways
QuickGOQ6NT16
Ontology : AmiGOintegral component of plasma membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC18B1
Atlas of Cancer Signalling NetworkSLC18B1
Wikipedia pathwaysSLC18B1
Orthology - Evolution
OrthoDB116843
GeneTree (enSembl)ENSG00000146409
Phylogenetic Trees/Animal Genes : TreeFamSLC18B1
HOVERGENQ6NT16
HOGENOMQ6NT16
Homologs : HomoloGeneSLC18B1
Homology/Alignments : Family Browser (UCSC)SLC18B1
Gene fusions - Rearrangements
Fusion : QuiverSLC18B1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC18B1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC18B1
dbVarSLC18B1
ClinVarSLC18B1
1000_GenomesSLC18B1 
Exome Variant ServerSLC18B1
ExAC (Exome Aggregation Consortium)ENSG00000146409
GNOMAD BrowserENSG00000146409
Varsome BrowserSLC18B1
Genetic variants : HAPMAP116843
Genomic Variants (DGV)SLC18B1 [DGVbeta]
DECIPHERSLC18B1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC18B1 
Mutations
ICGC Data PortalSLC18B1 
TCGA Data PortalSLC18B1 
Broad Tumor PortalSLC18B1
OASIS PortalSLC18B1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC18B1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC18B1
DgiDB (Drug Gene Interaction Database)SLC18B1
DoCM (Curated mutations)SLC18B1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC18B1 (select a term)
intoGenSLC18B1
Cancer3DSLC18B1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613361   
Orphanet
DisGeNETSLC18B1
MedgenSLC18B1
Genetic Testing Registry SLC18B1
NextProtQ6NT16 [Medical]
TSGene116843
GENETestsSLC18B1
Target ValidationSLC18B1
Huge Navigator SLC18B1 [HugePedia]
snp3D : Map Gene to Disease116843
BioCentury BCIQSLC18B1
ClinGenSLC18B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116843
Chemical/Pharm GKB GenePA134992727
Clinical trialSLC18B1
Miscellaneous
canSAR (ICR)SLC18B1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC18B1
EVEXSLC18B1
GoPubMedSLC18B1
iHOPSLC18B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:29:09 CEST 2018

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