Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC19A2 (solute carrier family 19 (thiamine transporter), member 2)

Identity

Other namesTC1
THMD1
THT1
THTR1
TRMA
HGNC (Hugo) SLC19A2
LocusID (NCBI) 10560
Atlas_Id 53830
Location 1q24.2
Location_base_pair Starts at 169433149 and ends at 169455208 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC19A2   10938
Cards
Entrez_Gene (NCBI)SLC19A2  10560  solute carrier family 19 (thiamine transporter), member 2
GeneCards (Weizmann)SLC19A2
Ensembl hg19 (Hinxton)ENSG00000117479 [Gene_View]  chr1:169433149-169455208 [Contig_View]  SLC19A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000117479 [Gene_View]  chr1:169433149-169455208 [Contig_View]  SLC19A2 [Vega]
ICGC DataPortalENSG00000117479
TCGA cBioPortalSLC19A2
AceView (NCBI)SLC19A2
Genatlas (Paris)SLC19A2
WikiGenes10560
SOURCE (Princeton)SLC19A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC19A2  -     chr1:169433149-169455208 -  1q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC19A2  -     1q24.2   [Description]    (hg38-Dec_2013)
EnsemblSLC19A2 - 1q24.2 [CytoView hg19]  SLC19A2 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBISLC19A2 [Mapview hg19]  SLC19A2 [Mapview hg38]
OMIM249270   603941   
Gene and transcription
Genbank (Entrez)AB209540 AF135488 AF153330 AF160812 AF272359
RefSeq transcript (Entrez)NM_006996
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008255 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)SLC19A2
Cluster EST : UnigeneHs.30246 [ NCBI ]
CGAP (NCI)Hs.30246
Alternative Splicing GalleryENSG00000117479
Gene ExpressionSLC19A2 [ NCBI-GEO ]     SLC19A2 [ SEEK ]   SLC19A2 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10560
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60779 (Uniprot)
NextProtO60779  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60779
Splice isoforms : SwissVarO60779 (Swissvar)
PhosPhoSitePlusO60779
Domains : Interpro (EBI)Folate_carrier    MFS_dom    ThTr-1   
Domain families : Pfam (Sanger)Folate_carrier (PF01770)   
Domain families : Pfam (NCBI)pfam01770   
DMDM Disease mutations10560
Blocks (Seattle)SLC19A2
Human Protein AtlasENSG00000117479
Peptide AtlasO60779
HPRD04897
IPIIPI00031631   IPI00103058   IPI00556087   IPI00514748   
Protein Interaction databases
DIP (DOE-UCLA)O60779
IntAct (EBI)O60779
FunCoupENSG00000117479
BioGRIDSLC19A2
IntegromeDBSLC19A2
STRING (EMBL)SLC19A2
ZODIACSLC19A2
Ontologies - Pathways
QuickGOO60779
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  integral component of plasma membrane  vitamin metabolic process  water-soluble vitamin metabolic process  folic acid transporter activity  thiamine transmembrane transporter activity  thiamine uptake transmembrane transporter activity  thiamine uptake transmembrane transporter activity  folic acid transport  thiamine transport  integral component of membrane  thiamine-containing compound metabolic process  small molecule metabolic process  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  integral component of plasma membrane  vitamin metabolic process  water-soluble vitamin metabolic process  folic acid transporter activity  thiamine transmembrane transporter activity  thiamine uptake transmembrane transporter activity  thiamine uptake transmembrane transporter activity  folic acid transport  thiamine transport  integral component of membrane  thiamine-containing compound metabolic process  small molecule metabolic process  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  
Pathways : KEGGVitamin digestion and absorption   
Protein Interaction DatabaseSLC19A2
Atlas of Cancer Signalling NetworkSLC19A2
Wikipedia pathwaysSLC19A2
Orthology - Evolution
OrthoDB10560
GeneTree (enSembl)ENSG00000117479
Phylogenetic Trees/Animal Genes : TreeFamSLC19A2
Homologs : HomoloGeneSLC19A2
Homology/Alignments : Family Browser (UCSC)SLC19A2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC19A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC19A2
dbVarSLC19A2
ClinVarSLC19A2
1000_GenomesSLC19A2 
Exome Variant ServerSLC19A2
Exome Aggregation Consortium (ExAC)ENSG00000117479
SNP (GeneSNP Utah)SLC19A2
SNP : HGBaseSLC19A2
Genetic variants : HAPMAPSLC19A2
Genomic Variants (DGV)SLC19A2 [DGVbeta]
Mutations
ICGC Data PortalSLC19A2 
TCGA Data PortalSLC19A2 
Tumor PortalSLC19A2
TCGA Copy Number PortalSLC19A2
Somatic Mutations in Cancer : COSMICSLC19A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
BioMutasearch SLC19A2
DgiDB (Drug Gene Interaction Database)SLC19A2
DoCM (Curated mutations)SLC19A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC19A2 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:169433149-169455208
CONAN: Copy Number AnalysisSLC19A2 
Mutations and Diseases : HGMDSLC19A2
OMIM249270    603941   
MedgenSLC19A2
NextProtO60779 [Medical]
TSGene10560
GENETestsSLC19A2
Huge Navigator SLC19A2 [HugePedia]  SLC19A2 [HugeCancerGEM]
snp3D : Map Gene to Disease10560
BioCentury BCIQSLC19A2
General knowledge
Chemical/Protein Interactions : CTD10560
Chemical/Pharm GKB GenePA35825
Clinical trialSLC19A2
Other databases
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC19A2
GoPubMedSLC19A2
iHOPSLC19A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:30:06 CET 2016

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