Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC19A2 (solute carrier family 19 (thiamine transporter), member 2)

Identity

Other namesTC1
THMD1
THT1
THTR1
TRMA
HGNC (Hugo) SLC19A2
LocusID (NCBI) 10560
Location 1q24.2
Location_base_pair Starts at 169433149 and ends at 169455208 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SLC19A2   10938
Cards
Entrez_Gene (NCBI)SLC19A2  10560  solute carrier family 19 (thiamine transporter), member 2
GeneCards (Weizmann)SLC19A2
Ensembl (Hinxton)ENSG00000117479 [Gene_View]  chr1:169433149-169455208 [Contig_View]  SLC19A2 [Vega]
ICGC DataPortalENSG00000117479
AceView (NCBI)SLC19A2
Genatlas (Paris)SLC19A2
WikiGenes10560
SOURCE (Princeton)NM_006996
Genomic and cartography
GoldenPath (UCSC)SLC19A2  -  1q24.2   chr1:169433149-169455208 -  1q24.2   [Description]    (hg19-Feb_2009)
EnsemblSLC19A2 - 1q24.2 [CytoView]
Mapping of homologs : NCBISLC19A2 [Mapview]
OMIM249270   603941   
Gene and transcription
Genbank (Entrez)AB209540 AF135488 AF153330 AF160812 AF272359
RefSeq transcript (Entrez)NM_006996
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_008255 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)SLC19A2
Cluster EST : UnigeneHs.30246 [ NCBI ]
CGAP (NCI)Hs.30246
Alternative Splicing GalleryENSG00000117479
Gene ExpressionSLC19A2 [ NCBI-GEO ]     SLC19A2 [ SEEK ]   SLC19A2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60779 (Uniprot)
NextProtO60779  [Medical]
With graphics : InterProO60779
Splice isoforms : SwissVarO60779 (Swissvar)
Domains : Interpro (EBI)Folate_carrier    MFS_dom_general_subst_transpt    ThTr-1   
Related proteins : CluSTrO60779
Domain families : Pfam (Sanger)Folate_carrier (PF01770)   
Domain families : Pfam (NCBI)pfam01770   
DMDM Disease mutations10560
Blocks (Seattle)O60779
Human Protein AtlasENSG00000117479
Peptide AtlasO60779
HPRD04897
IPIIPI00031631   IPI00103058   IPI00556087   IPI00514748   
Protein Interaction databases
DIP (DOE-UCLA)O60779
IntAct (EBI)O60779
FunCoupENSG00000117479
BioGRIDSLC19A2
InParanoidO60779
Interologous Interaction database O60779
IntegromeDBSLC19A2
STRING (EMBL)SLC19A2
Ontologies - Pathways
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  vitamin metabolic process  water-soluble vitamin metabolic process  folic acid transporter activity  thiamine transmembrane transporter activity  thiamine uptake transmembrane transporter activity  thiamine uptake transmembrane transporter activity  folic acid transport  thiamine transport  integral component of membrane  thiamine-containing compound metabolic process  small molecule metabolic process  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  vitamin metabolic process  water-soluble vitamin metabolic process  folic acid transporter activity  thiamine transmembrane transporter activity  thiamine uptake transmembrane transporter activity  thiamine uptake transmembrane transporter activity  folic acid transport  thiamine transport  integral component of membrane  thiamine-containing compound metabolic process  small molecule metabolic process  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  thiamine transmembrane transport  
Pathways : KEGGVitamin digestion and absorption   
Protein Interaction DatabaseSLC19A2
Wikipedia pathwaysSLC19A2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC19A2
SNP (GeneSNP Utah)SLC19A2
SNP : HGBaseSLC19A2
Genetic variants : HAPMAPSLC19A2
1000_GenomesSLC19A2 
ICGC programENSG00000117479 
CONAN: Copy Number AnalysisSLC19A2 
Somatic Mutations in Cancer : COSMICSLC19A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)EURO-WABB PROJECT OPEN VARIATION DATABASE
Mutations and Diseases : HGMDSLC19A2
OMIM249270    603941   
MedgenSLC19A2
GENETestsSLC19A2
Disease Genetic AssociationSLC19A2
Huge Navigator SLC19A2 [HugePedia]  SLC19A2 [HugeCancerGEM]
Genomic VariantsSLC19A2  SLC19A2 [DGVbeta]
Exome VariantSLC19A2
dbVarSLC19A2
ClinVarSLC19A2
snp3D : Map Gene to Disease10560
General knowledge
Homologs : HomoloGeneSLC19A2
Homology/Alignments : Family Browser (UCSC)SLC19A2
Phylogenetic Trees/Animal Genes : TreeFamSLC19A2
Chemical/Protein Interactions : CTD10560
Chemical/Pharm GKB GenePA35825
Clinical trialSLC19A2
Cancer Resource (Charite)ENSG00000117479
Other databases
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
CoreMineSLC19A2
iHOPSLC19A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:16:46 CEST 2014

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