Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC1A7 (solute carrier family 1 member 7)

Identity

Alias_namessolute carrier family 1 (glutamate transporter), member 7
Alias_symbol (synonym)EAAT5
Other aliasAAAT
HGNC (Hugo) SLC1A7
LocusID (NCBI) 6512
Atlas_Id 73313
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53087179 and ends at 53142632 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FGGY (1p32.1) / SLC1A7 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC1A7   10945
Cards
Entrez_Gene (NCBI)SLC1A7  6512  solute carrier family 1 member 7
AliasesAAAT; EAAT5
GeneCards (Weizmann)SLC1A7
Ensembl hg19 (Hinxton)ENSG00000162383 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162383 [Gene_View]  chr1:53087179-53142632 [Contig_View]  SLC1A7 [Vega]
ICGC DataPortalENSG00000162383
TCGA cBioPortalSLC1A7
AceView (NCBI)SLC1A7
Genatlas (Paris)SLC1A7
WikiGenes6512
SOURCE (Princeton)SLC1A7
Genetics Home Reference (NIH)SLC1A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC1A7  -     chr1:53087179-53142632 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC1A7  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblSLC1A7 - 1p32.3 [CytoView hg19]  SLC1A7 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBISLC1A7 [Mapview hg19]  SLC1A7 [Mapview hg38]
OMIM604471   
Gene and transcription
Genbank (Entrez)AB593059 AB593060 AB593061 AK093921 BC000651
RefSeq transcript (Entrez)NM_001287595 NM_001287596 NM_001287597 NM_006671
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC1A7
Cluster EST : UnigeneHs.104637 [ NCBI ]
CGAP (NCI)Hs.104637
Alternative Splicing GalleryENSG00000162383
Gene ExpressionSLC1A7 [ NCBI-GEO ]   SLC1A7 [ EBI - ARRAY_EXPRESS ]   SLC1A7 [ SEEK ]   SLC1A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC1A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6512
GTEX Portal (Tissue expression)SLC1A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00341   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00341  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00341
Splice isoforms : SwissVarO00341
PhosPhoSitePlusO00341
Domaine pattern : Prosite (Expaxy)NA_DICARBOXYL_SYMP_1 (PS00713)    NA_DICARBOXYL_SYMP_2 (PS00714)   
Domains : Interpro (EBI)Na-dicarboxylate_symporter    Na-dicarboxylate_symporter_CS   
Domain families : Pfam (Sanger)SDF (PF00375)   
Domain families : Pfam (NCBI)pfam00375   
Conserved Domain (NCBI)SLC1A7
DMDM Disease mutations6512
Blocks (Seattle)SLC1A7
SuperfamilyO00341
Human Protein AtlasENSG00000162383
Peptide AtlasO00341
HPRD09194
IPIIPI00298441   IPI00030382   
Protein Interaction databases
DIP (DOE-UCLA)O00341
IntAct (EBI)O00341
FunCoupENSG00000162383
BioGRIDSLC1A7
STRING (EMBL)SLC1A7
ZODIACSLC1A7
Ontologies - Pathways
QuickGOO00341
Ontology : AmiGOL-glutamate transmembrane transporter activity  high-affinity glutamate transmembrane transporter activity  plasma membrane  ion transport  dicarboxylic acid transport  glutamate secretion  amino acid transmembrane transporter activity  integral component of membrane  L-glutamate transmembrane transport  
Ontology : EGO-EBIL-glutamate transmembrane transporter activity  high-affinity glutamate transmembrane transporter activity  plasma membrane  ion transport  dicarboxylic acid transport  glutamate secretion  amino acid transmembrane transporter activity  integral component of membrane  L-glutamate transmembrane transport  
Pathways : KEGGGlutamatergic synapse   
NDEx NetworkSLC1A7
Atlas of Cancer Signalling NetworkSLC1A7
Wikipedia pathwaysSLC1A7
Orthology - Evolution
OrthoDB6512
GeneTree (enSembl)ENSG00000162383
Phylogenetic Trees/Animal Genes : TreeFamSLC1A7
HOVERGENO00341
HOGENOMO00341
Homologs : HomoloGeneSLC1A7
Homology/Alignments : Family Browser (UCSC)SLC1A7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC1A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC1A7
dbVarSLC1A7
ClinVarSLC1A7
1000_GenomesSLC1A7 
Exome Variant ServerSLC1A7
ExAC (Exome Aggregation Consortium)SLC1A7 (select the gene name)
Genetic variants : HAPMAP6512
Genomic Variants (DGV)SLC1A7 [DGVbeta]
DECIPHERSLC1A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC1A7 
Mutations
ICGC Data PortalSLC1A7 
TCGA Data PortalSLC1A7 
Broad Tumor PortalSLC1A7
OASIS PortalSLC1A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC1A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC1A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC1A7
DgiDB (Drug Gene Interaction Database)SLC1A7
DoCM (Curated mutations)SLC1A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC1A7 (select a term)
intoGenSLC1A7
Cancer3DSLC1A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604471   
Orphanet
MedgenSLC1A7
Genetic Testing Registry SLC1A7
NextProtO00341 [Medical]
TSGene6512
GENETestsSLC1A7
Target ValidationSLC1A7
Huge Navigator SLC1A7 [HugePedia]
snp3D : Map Gene to Disease6512
BioCentury BCIQSLC1A7
ClinGenSLC1A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6512
Chemical/Pharm GKB GenePA35832
Clinical trialSLC1A7
Miscellaneous
canSAR (ICR)SLC1A7 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC1A7
EVEXSLC1A7
GoPubMedSLC1A7
iHOPSLC1A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:57 CEST 2017

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