Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC20A1 (solute carrier family 20 member 1)

Identity

Alias_namesGLVR1
solute carrier family 20 (phosphate transporter)
Alias_symbol (synonym)PiT-1
Glvr-1
Other aliasPIT1
HGNC (Hugo) SLC20A1
LocusID (NCBI) 6574
Atlas_Id 42314
Location 2q14.1  [Link to chromosome band 2q14]
Location_base_pair Starts at 112645857 and ends at 112663823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD164 (6q21) / SLC20A1 (2q13)HLA-DMA (6p21.32) / SLC20A1 (2q13)PRNP (20p13) / SLC20A1 (2q13)
SLC20A1 (2q13) / FN1 (2q35)SLC20A1 (2q13) / POLR1B (2q13)SLC20A1 (2q13) / TOMM20 (1q42.3)
TSG101 (11p15.1) / SLC20A1 (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC20A1   10946
Cards
Entrez_Gene (NCBI)SLC20A1  6574  solute carrier family 20 member 1
AliasesGLVR1; Glvr-1; PIT1; PiT-1
GeneCards (Weizmann)SLC20A1
Ensembl hg19 (Hinxton)ENSG00000144136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144136 [Gene_View]  chr2:112645857-112663823 [Contig_View]  SLC20A1 [Vega]
ICGC DataPortalENSG00000144136
TCGA cBioPortalSLC20A1
AceView (NCBI)SLC20A1
Genatlas (Paris)SLC20A1
WikiGenes6574
SOURCE (Princeton)SLC20A1
Genetics Home Reference (NIH)SLC20A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC20A1  -     chr2:112645857-112663823 +  2q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC20A1  -     2q14.1   [Description]    (hg19-Feb_2009)
EnsemblSLC20A1 - 2q14.1 [CytoView hg19]  SLC20A1 - 2q14.1 [CytoView hg38]
Mapping of homologs : NCBISLC20A1 [Mapview hg19]  SLC20A1 [Mapview hg38]
OMIM137570   
Gene and transcription
Genbank (Entrez)AK123420 AK312738 BC019944 BC075818 BX647555
RefSeq transcript (Entrez)NM_005415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC20A1
Cluster EST : UnigeneHs.732750 [ NCBI ]
CGAP (NCI)Hs.732750
Alternative Splicing GalleryENSG00000144136
Gene ExpressionSLC20A1 [ NCBI-GEO ]   SLC20A1 [ EBI - ARRAY_EXPRESS ]   SLC20A1 [ SEEK ]   SLC20A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC20A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6574
GTEX Portal (Tissue expression)SLC20A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUM9
Splice isoforms : SwissVarQ8WUM9
PhosPhoSitePlusQ8WUM9
Domains : Interpro (EBI)Phos_transporter   
Domain families : Pfam (Sanger)PHO4 (PF01384)   
Domain families : Pfam (NCBI)pfam01384   
Conserved Domain (NCBI)SLC20A1
DMDM Disease mutations6574
Blocks (Seattle)SLC20A1
SuperfamilyQ8WUM9
Human Protein AtlasENSG00000144136
Peptide AtlasQ8WUM9
HPRD08846
IPIIPI00023035   IPI00902658   IPI00917624   IPI00917857   IPI00916756   IPI00915818   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUM9
IntAct (EBI)Q8WUM9
FunCoupENSG00000144136
BioGRIDSLC20A1
STRING (EMBL)SLC20A1
ZODIACSLC20A1
Ontologies - Pathways
QuickGOQ8WUM9
Ontology : AmiGOsignal transducer activity  receptor activity  inorganic phosphate transmembrane transporter activity  high-affinity inorganic phosphate:sodium symporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  phosphate-containing compound metabolic process  transport  ion transport  signal transduction  sodium-dependent phosphate transmembrane transporter activity  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  sodium-dependent phosphate transport  
Ontology : EGO-EBIsignal transducer activity  receptor activity  inorganic phosphate transmembrane transporter activity  high-affinity inorganic phosphate:sodium symporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  phosphate-containing compound metabolic process  transport  ion transport  signal transduction  sodium-dependent phosphate transmembrane transporter activity  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  positive regulation of I-kappaB kinase/NF-kappaB signaling  sodium-dependent phosphate transport  
NDEx NetworkSLC20A1
Atlas of Cancer Signalling NetworkSLC20A1
Wikipedia pathwaysSLC20A1
Orthology - Evolution
OrthoDB6574
GeneTree (enSembl)ENSG00000144136
Phylogenetic Trees/Animal Genes : TreeFamSLC20A1
HOVERGENQ8WUM9
HOGENOMQ8WUM9
Homologs : HomoloGeneSLC20A1
Homology/Alignments : Family Browser (UCSC)SLC20A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC20A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC20A1
dbVarSLC20A1
ClinVarSLC20A1
1000_GenomesSLC20A1 
Exome Variant ServerSLC20A1
ExAC (Exome Aggregation Consortium)SLC20A1 (select the gene name)
Genetic variants : HAPMAP6574
Genomic Variants (DGV)SLC20A1 [DGVbeta]
DECIPHERSLC20A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC20A1 
Mutations
ICGC Data PortalSLC20A1 
TCGA Data PortalSLC20A1 
Broad Tumor PortalSLC20A1
OASIS PortalSLC20A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC20A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC20A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC20A1
DgiDB (Drug Gene Interaction Database)SLC20A1
DoCM (Curated mutations)SLC20A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC20A1 (select a term)
intoGenSLC20A1
Cancer3DSLC20A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM137570   
Orphanet
MedgenSLC20A1
Genetic Testing Registry SLC20A1
NextProtQ8WUM9 [Medical]
TSGene6574
GENETestsSLC20A1
Target ValidationSLC20A1
Huge Navigator SLC20A1 [HugePedia]
snp3D : Map Gene to Disease6574
BioCentury BCIQSLC20A1
ClinGenSLC20A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6574
Chemical/Pharm GKB GenePA35833
Clinical trialSLC20A1
Miscellaneous
canSAR (ICR)SLC20A1 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC20A1
EVEXSLC20A1
GoPubMedSLC20A1
iHOPSLC20A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:31:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.