Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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SLC20A2 (solute carrier family 20 (phosphate transporter), member 2)

Identity

Other namesGLVR-2
GLVR2
IBGC1
IBGC3
MLVAR
PIT-2
PIT2
RAM1
HGNC (Hugo) SLC20A2
LocusID (NCBI) 6575
Location 8p11.21
Location_base_pair Starts at 42273980 and ends at 42358978 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC20A2   10947
Cards
Entrez_Gene (NCBI)SLC20A2  6575  solute carrier family 20 (phosphate transporter), member 2
GeneCards (Weizmann)SLC20A2
Ensembl hg19 (Hinxton)ENSG00000168575 [Gene_View]  chr8:42273980-42358978 [Contig_View]  SLC20A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168575 [Gene_View]  chr8:42273980-42358978 [Contig_View]  SLC20A2 [Vega]
ICGC DataPortalENSG00000168575
cBioPortalSLC20A2
AceView (NCBI)SLC20A2
Genatlas (Paris)SLC20A2
WikiGenes6575
SOURCE (Princeton)SLC20A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC20A2  -     chr8:42273980-42358978 -  8p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC20A2  -     8p11.21   [Description]    (hg38-Dec_2013)
EnsemblSLC20A2 - 8p11.21 [CytoView hg19]  SLC20A2 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBISLC20A2 [Mapview hg19]  SLC20A2 [Mapview hg38]
OMIM158378   213600   213600   
Gene and transcription
Genbank (Entrez)AK291202 AK295952 AK314774 BC028600 DA418477
RefSeq transcript (Entrez)NM_001257180 NM_001257181 NM_006749
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_032161 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)SLC20A2
Cluster EST : UnigeneHs.654763 [ NCBI ]
CGAP (NCI)Hs.654763
Alternative Splicing : Fast-db (Paris)GSHG0029553
Alternative Splicing GalleryENSG00000168575
Gene ExpressionSLC20A2 [ NCBI-GEO ]     SLC20A2 [ SEEK ]   SLC20A2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08357 (Uniprot)
NextProtQ08357  [Medical]
With graphics : InterProQ08357
Splice isoforms : SwissVarQ08357 (Swissvar)
Domains : Interpro (EBI)Phos_transporter   
Related proteins : CluSTrQ08357
Domain families : Pfam (Sanger)PHO4 (PF01384)   
Domain families : Pfam (NCBI)pfam01384   
DMDM Disease mutations6575
Blocks (Seattle)Q08357
Human Protein AtlasENSG00000168575
Peptide AtlasQ08357
HPRD08865
IPIIPI00009504   IPI00789543   IPI01014078   IPI00979013   IPI00980180   IPI00976815   
Protein Interaction databases
DIP (DOE-UCLA)Q08357
IntAct (EBI)Q08357
FunCoupENSG00000168575
BioGRIDSLC20A2
IntegromeDBSLC20A2
STRING (EMBL)SLC20A2
Ontologies - Pathways
QuickGOQ08357
Ontology : AmiGOvirus receptor activity  receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  transport  ion transport  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  viral entry into host cell  transmembrane transport  extracellular exosome  
Ontology : EGO-EBIvirus receptor activity  receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  transport  ion transport  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  viral entry into host cell  transmembrane transport  extracellular exosome  
Protein Interaction DatabaseSLC20A2
DoCM (Curated mutations)SLC20A2
Wikipedia pathwaysSLC20A2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC20A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC20A2
dbVarSLC20A2
ClinVarSLC20A2
1000_GenomesSLC20A2 
Exome Variant ServerSLC20A2
SNP (GeneSNP Utah)SLC20A2
SNP : HGBaseSLC20A2
Genetic variants : HAPMAPSLC20A2
Genomic Variants (DGV)SLC20A2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000168575 
Somatic Mutations in Cancer : COSMICSLC20A2 
CONAN: Copy Number AnalysisSLC20A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:42273980-42358978
Mutations and Diseases : HGMDSLC20A2
OMIM158378    213600    213600   
MedgenSLC20A2
NextProtQ08357 [Medical]
GENETestsSLC20A2
Disease Genetic AssociationSLC20A2
Huge Navigator SLC20A2 [HugePedia]  SLC20A2 [HugeCancerGEM]
snp3D : Map Gene to Disease6575
DGIdb (Drug Gene Interaction db)SLC20A2
General knowledge
Homologs : HomoloGeneSLC20A2
Homology/Alignments : Family Browser (UCSC)SLC20A2
Phylogenetic Trees/Animal Genes : TreeFamSLC20A2
Chemical/Protein Interactions : CTD6575
Chemical/Pharm GKB GenePA35834
Clinical trialSLC20A2
Cancer Resource (Charite)ENSG00000168575
Other databases
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
CoreMineSLC20A2
GoPubMedSLC20A2
iHOPSLC20A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:18:50 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.