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SLC20A2 (solute carrier family 20 member 2)

Identity

Alias (NCBI)GLVR-2
GLVR2
IBGC1
IBGC2
IBGC3
MLVAR
PIT-2
PIT2
RAM1
Ram-1
HGNC (Hugo) SLC20A2
HGNC Alias symbPiT-2
Glvr-2
Ram-1
HGNC Previous nameMLVAR
 GLVR2
HGNC Previous namesolute carrier family 20 (phosphate transporter), member 2
 murine leukemia virus, amphotropic; receptor
LocusID (NCBI) 6575
Atlas_Id 42315
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 42416475 and ends at 42541954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHRM2 (7q33) / SLC20A2 (8p11.21)CORO6 (17q11.2) / SLC20A2 (8p11.21)DSCAML1 (11q23.3) / SLC20A2 (8p11.21)
FGFR1 (8p11.23) / SLC20A2 (8p11.21)H1F0 (22q13.1) / SLC20A2 (8p11.21)PIP5K1A (1q21.3) / SLC20A2 (8p11.21)
SLC20A2 (8p11.21) / AC130352.1 ()SLC20A2 (8p11.21) / ANKH (5p15.2)SLC20A2 (8p11.21) / CYB5A (18q22.3)
SLC20A2 (8p11.21) / DBX2 (12q12)SLC20A2 (8p11.21) / DOCK8 (9p24.3)SLC20A2 (8p11.21) / FBXW7 (4q31.3)
SLC20A2 (8p11.21) / HIP1 (7q11.23)SLC20A2 (8p11.21) / SLC20A2 (8p11.21)SLC20A2 (8p11.21) / TUSC3 (8p22)
SLC20A2 (8p11.21) / ZMAT4 (8p11.21)SLC20A2 (8p11.21) / ZNHIT6 (1p22.3)SLC25A44 (1q22) / SLC20A2 (8p11.21)
CORO6 17q11.2 / SLC20A2 8p11.21FGFR1 8p11.23 / SLC20A2 8p11.21PIP5K1A 1q21.3 / SLC20A2 8p11.21
SLC20A2 8p11.21 AC130352.1SLC20A2 8p11.21 / ANKH 5p15.2SLC20A2 8p11.21 / DOCK8 9p24.3
SLC20A2 8p11.21 / FBXW7 4q31.3SLC20A2 8p11.21 / HIP1 7q11.23SLC20A2 8p11.21 / TUSC3 8p22
SLC20A2 8p11.21 / ZMAT4 8p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC20A2   10947
Cards
Entrez_Gene (NCBI)SLC20A2    solute carrier family 20 member 2
AliasesGLVR-2; GLVR2; IBGC1; IBGC2; 
IBGC3; MLVAR; PIT-2; PIT2; RAM1; Ram-1
GeneCards (Weizmann)SLC20A2
Ensembl hg19 (Hinxton)ENSG00000168575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168575 [Gene_View]  ENSG00000168575 [Sequence]  chr8:42416475-42541954 [Contig_View]  SLC20A2 [Vega]
ICGC DataPortalENSG00000168575
TCGA cBioPortalSLC20A2
AceView (NCBI)SLC20A2
Genatlas (Paris)SLC20A2
SOURCE (Princeton)SLC20A2
Genetics Home Reference (NIH)SLC20A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC20A2  -     chr8:42416475-42541954 -  8p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC20A2  -     8p11.21   [Description]    (hg19-Feb_2009)
GoldenPathSLC20A2 - 8p11.21 [CytoView hg19]  SLC20A2 - 8p11.21 [CytoView hg38]
ImmunoBaseENSG00000168575
Genome Data Viewer NCBISLC20A2 [Mapview hg19]  
OMIM158378   213600   
Gene and transcription
Genbank (Entrez)AK291202 AK295952 AK314774 BC028600 DA418477
RefSeq transcript (Entrez)NM_001257180 NM_001257181 NM_006749
Consensus coding sequences : CCDS (NCBI)SLC20A2
Gene ExpressionSLC20A2 [ NCBI-GEO ]   SLC20A2 [ EBI - ARRAY_EXPRESS ]   SLC20A2 [ SEEK ]   SLC20A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC20A2 [ Firebrowse - Broad ]
GenevisibleExpression of SLC20A2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6575
GTEX Portal (Tissue expression)SLC20A2
Human Protein AtlasENSG00000168575-SLC20A2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08357   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08357  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08357
PhosPhoSitePlusQ08357
Domains : Interpro (EBI)Phos_transporter   
Domain families : Pfam (Sanger)PHO4 (PF01384)   
Domain families : Pfam (NCBI)pfam01384   
Conserved Domain (NCBI)SLC20A2
SuperfamilyQ08357
AlphaFold pdb e-kbQ08357   
Human Protein Atlas [tissue]ENSG00000168575-SLC20A2 [tissue]
HPRD08865
Protein Interaction databases
DIP (DOE-UCLA)Q08357
IntAct (EBI)Q08357
BioGRIDSLC20A2
STRING (EMBL)SLC20A2
ZODIACSLC20A2
Ontologies - Pathways
QuickGOQ08357
Ontology : AmiGOvirus receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  ion transport  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  signaling receptor activity  viral entry into host cell  extracellular exosome  
Ontology : EGO-EBIvirus receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  ion transport  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  signaling receptor activity  viral entry into host cell  extracellular exosome  
NDEx NetworkSLC20A2
Atlas of Cancer Signalling NetworkSLC20A2
Wikipedia pathwaysSLC20A2
Orthology - Evolution
OrthoDB6575
GeneTree (enSembl)ENSG00000168575
Phylogenetic Trees/Animal Genes : TreeFamSLC20A2
Homologs : HomoloGeneSLC20A2
Homology/Alignments : Family Browser (UCSC)SLC20A2
Gene fusions - Rearrangements
Fusion : MitelmanCORO6/SLC20A2 [17q11.2/8p11.21]  
Fusion : MitelmanFGFR1/SLC20A2 [8p11.23/8p11.21]  
Fusion : MitelmanPIP5K1A/SLC20A2 [1q21.3/8p11.21]  
Fusion : MitelmanSLC20A2/ANKH [8p11.21/5p15.2]  
Fusion : MitelmanSLC20A2/DOCK8 [8p11.21/9p24.3]  
Fusion : MitelmanSLC20A2/FBXW7 [8p11.21/4q31.3]  
Fusion : MitelmanSLC20A2/HIP1 [8p11.21/7q11.23]  
Fusion : MitelmanSLC20A2/TUSC3 [8p11.21/8p22]  
Fusion : MitelmanSLC20A2/ZMAT4 [8p11.21/8p11.21]  
Fusion : QuiverSLC20A2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC20A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC20A2
dbVarSLC20A2
ClinVarSLC20A2
MonarchSLC20A2
1000_GenomesSLC20A2 
Exome Variant ServerSLC20A2
GNOMAD BrowserENSG00000168575
Varsome BrowserSLC20A2
ACMGSLC20A2 variants
VarityQ08357
Genomic Variants (DGV)SLC20A2 [DGVbeta]
DECIPHERSLC20A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC20A2 
Mutations
ICGC Data PortalSLC20A2 
TCGA Data PortalSLC20A2 
Broad Tumor PortalSLC20A2
OASIS PortalSLC20A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC20A2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC20A2
Mutations and Diseases : HGMDSLC20A2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC20A2
DgiDB (Drug Gene Interaction Database)SLC20A2
DoCM (Curated mutations)SLC20A2
CIViC (Clinical Interpretations of Variants in Cancer)SLC20A2
Cancer3DSLC20A2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM158378    213600   
Orphanet1923   
DisGeNETSLC20A2
MedgenSLC20A2
Genetic Testing Registry SLC20A2
NextProtQ08357 [Medical]
GENETestsSLC20A2
Target ValidationSLC20A2
Huge Navigator SLC20A2 [HugePedia]
ClinGenSLC20A2
Clinical trials, drugs, therapy
MyCancerGenomeSLC20A2
Protein Interactions : CTDSLC20A2
Pharm GKB GenePA35834
PharosQ08357
Clinical trialSLC20A2
Miscellaneous
canSAR (ICR)SLC20A2
HarmonizomeSLC20A2
DataMed IndexSLC20A2
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC20A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:31:27 CEST 2021

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