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SLC20A2 (solute carrier family 20 (phosphate transporter), member 2)

Identity

Other namesGLVR-2
GLVR2
IBGC1
IBGC3
MLVAR
PIT-2
PIT2
RAM1
HGNC (Hugo) SLC20A2
LocusID (NCBI) 6575
Location 8p11.21
Location_base_pair Starts at 42273980 and ends at 42358978 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC20A2   10947
Cards
Entrez_Gene (NCBI)SLC20A2  6575  solute carrier family 20 (phosphate transporter), member 2
GeneCards (Weizmann)SLC20A2
Ensembl (Hinxton)ENSG00000168575 [Gene_View]  chr8:42273980-42358978 [Contig_View]  SLC20A2 [Vega]
ICGC DataPortalENSG00000168575
cBioPortalSLC20A2
AceView (NCBI)SLC20A2
Genatlas (Paris)SLC20A2
WikiGenes6575
SOURCE (Princeton)NM_001257180 NM_001257181 NM_006749
Genomic and cartography
GoldenPath (UCSC)SLC20A2  -  8p11.21   chr8:42273980-42358978 -  8p11.21   [Description]    (hg19-Feb_2009)
EnsemblSLC20A2 - 8p11.21 [CytoView]
Mapping of homologs : NCBISLC20A2 [Mapview]
OMIM158378   213600   
Gene and transcription
Genbank (Entrez)AK291202 AK295952 AK314774 BC028600 DA418477
RefSeq transcript (Entrez)NM_001257180 NM_001257181 NM_006749
RefSeq genomic (Entrez)AC_000140 NC_000008 NC_018919 NG_032161 NT_167187 NW_001839130 NW_004929337
Consensus coding sequences : CCDS (NCBI)SLC20A2
Cluster EST : UnigeneHs.654763 [ NCBI ]
CGAP (NCI)Hs.654763
Alternative Splicing : Fast-db (Paris)GSHG0029553
Alternative Splicing GalleryENSG00000168575
Gene ExpressionSLC20A2 [ NCBI-GEO ]     SLC20A2 [ SEEK ]   SLC20A2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08357 (Uniprot)
NextProtQ08357  [Medical]
With graphics : InterProQ08357
Splice isoforms : SwissVarQ08357 (Swissvar)
Domains : Interpro (EBI)Phos_transporter [organisation]  
Related proteins : CluSTrQ08357
Domain families : Pfam (Sanger)PHO4 (PF01384)   
Domain families : Pfam (NCBI)pfam01384   
DMDM Disease mutations6575
Blocks (Seattle)Q08357
Human Protein AtlasENSG00000168575 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ08357
HPRD08865
IPIIPI00009504   IPI00789543   IPI01014078   IPI00979013   IPI00980180   IPI00976815   
Protein Interaction databases
DIP (DOE-UCLA)Q08357
IntAct (EBI)Q08357
FunCoupENSG00000168575
BioGRIDSLC20A2
InParanoidQ08357
Interologous Interaction database Q08357
IntegromeDBSLC20A2
STRING (EMBL)SLC20A2
Ontologies - Pathways
Ontology : AmiGOvirus receptor activity  receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  transport  ion transport  response to virus  membrane  viral process  phosphate ion transmembrane transport  sodium ion transmembrane transport  transmembrane transport  extracellular vesicular exosome  
Ontology : EGO-EBIvirus receptor activity  receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  transport  ion transport  response to virus  membrane  viral process  phosphate ion transmembrane transport  sodium ion transmembrane transport  transmembrane transport  extracellular vesicular exosome  
Protein Interaction DatabaseSLC20A2
Wikipedia pathwaysSLC20A2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC20A2
snp3D : Map Gene to Disease6575
SNP (GeneSNP Utah)SLC20A2
SNP : HGBaseSLC20A2
Genetic variants : HAPMAPSLC20A2
Exome VariantSLC20A2
1000_GenomesSLC20A2 
ICGC programENSG00000168575 
Somatic Mutations in Cancer : COSMICSLC20A2 
CONAN: Copy Number AnalysisSLC20A2 
Mutations and Diseases : HGMDSLC20A2
Mutations and Diseases : intOGenSLC20A2
Genomic VariantsSLC20A2  SLC20A2 [DGVbeta]
dbVarSLC20A2
ClinVarSLC20A2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM158378    213600   
MedgenSLC20A2
GENETestsSLC20A2
Disease Genetic AssociationSLC20A2
Huge Navigator SLC20A2 [HugePedia]  SLC20A2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSLC20A2
Homology/Alignments : Family Browser (UCSC)SLC20A2
Phylogenetic Trees/Animal Genes : TreeFamSLC20A2
Chemical/Protein Interactions : CTD6575
Chemical/Pharm GKB GenePA35834
Clinical trialSLC20A2
Cancer Resource (Charite)ENSG00000168575
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineSLC20A2
iHOPSLC20A2
OncoSearchSLC20A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:18:23 CEST 2014

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