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SLC20A2 (solute carrier family 20 member 2)

Identity

Other namesGLVR-2
GLVR2
IBGC1
IBGC3
MLVAR
PIT-2
PIT2
RAM1
Ram-1
HGNC (Hugo) SLC20A2
LocusID (NCBI) 6575
Atlas_Id 42315
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 42273980 and ends at 42358978 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHRM2 (7q33) / SLC20A2 (8p11.21)CORO6 (17q11.2) / SLC20A2 (8p11.21)DSCAML1 (11q23.3) / SLC20A2 (8p11.21)
FGFR1 (8p11.23) / SLC20A2 (8p11.21)H1F0 (22q13.1) / SLC20A2 (8p11.21)PIP5K1A (1q21.3) / SLC20A2 (8p11.21)
SLC20A2 (8p11.21) / AC130352.1 ()SLC20A2 (8p11.21) / ANKH (5p15.2)SLC20A2 (8p11.21) / CYB5A (18q22.3)
SLC20A2 (8p11.21) / DBX2 (12q12)SLC20A2 (8p11.21) / DOCK8 (9p24.3)SLC20A2 (8p11.21) / FBXW7 (4q31.3)
SLC20A2 (8p11.21) / HIP1 (7q11.23)SLC20A2 (8p11.21) / SLC20A2 (8p11.21)SLC20A2 (8p11.21) / TUSC3 (8p22)
SLC20A2 (8p11.21) / ZMAT4 (8p11.21)SLC20A2 (8p11.21) / ZNHIT6 (1p22.3)SLC25A44 (1q22) / SLC20A2 (8p11.21)
CORO6 17q11.2 / SLC20A2 8p11.21FGFR1 8p11.23 / SLC20A2 8p11.21PIP5K1A 1q21.3 / SLC20A2 8p11.21
SLC20A2 8p11.21 AC130352.1SLC20A2 8p11.21 / ANKH 5p15.2SLC20A2 8p11.21 / DOCK8 9p24.3
SLC20A2 8p11.21 / FBXW7 4q31.3SLC20A2 8p11.21 / HIP1 7q11.23SLC20A2 8p11.21 / TUSC3 8p22
SLC20A2 8p11.21 / ZMAT4 8p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC20A2   10947
Cards
Entrez_Gene (NCBI)SLC20A2  6575  solute carrier family 20 member 2
AliasesGLVR-2; GLVR2; IBGC1; IBGC3; 
MLVAR; PIT-2; PIT2; RAM1; Ram-1
GeneCards (Weizmann)SLC20A2
Ensembl hg19 (Hinxton)ENSG00000168575 [Gene_View]  chr8:42273980-42358978 [Contig_View]  SLC20A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168575 [Gene_View]  chr8:42273980-42358978 [Contig_View]  SLC20A2 [Vega]
ICGC DataPortalENSG00000168575
TCGA cBioPortalSLC20A2
AceView (NCBI)SLC20A2
Genatlas (Paris)SLC20A2
WikiGenes6575
SOURCE (Princeton)SLC20A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC20A2  -     chr8:42273980-42358978 -  8p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC20A2  -     8p11.21   [Description]    (hg38-Dec_2013)
EnsemblSLC20A2 - 8p11.21 [CytoView hg19]  SLC20A2 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBISLC20A2 [Mapview hg19]  SLC20A2 [Mapview hg38]
OMIM158378   213600   
Gene and transcription
Genbank (Entrez)AK291202 AK295952 AK314774 BC028600 DA418477
RefSeq transcript (Entrez)NM_001257180 NM_001257181 NM_006749
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_032161 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)SLC20A2
Cluster EST : UnigeneHs.654763 [ NCBI ]
CGAP (NCI)Hs.654763
Alternative Splicing GalleryENSG00000168575
Gene ExpressionSLC20A2 [ NCBI-GEO ]   SLC20A2 [ EBI - ARRAY_EXPRESS ]   SLC20A2 [ SEEK ]   SLC20A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC20A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6575
GTEX Portal (Tissue expression)SLC20A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08357 (Uniprot)
NextProtQ08357  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08357
Splice isoforms : SwissVarQ08357 (Swissvar)
PhosPhoSitePlusQ08357
Domains : Interpro (EBI)Phos_transporter   
Domain families : Pfam (Sanger)PHO4 (PF01384)   
Domain families : Pfam (NCBI)pfam01384   
DMDM Disease mutations6575
Blocks (Seattle)SLC20A2
SuperfamilyQ08357
Human Protein AtlasENSG00000168575
Peptide AtlasQ08357
HPRD08865
IPIIPI00009504   IPI00789543   IPI01014078   IPI00979013   IPI00980180   IPI00976815   
Protein Interaction databases
DIP (DOE-UCLA)Q08357
IntAct (EBI)Q08357
FunCoupENSG00000168575
BioGRIDSLC20A2
STRING (EMBL)SLC20A2
ZODIACSLC20A2
Ontologies - Pathways
QuickGOQ08357
Ontology : AmiGOvirus receptor activity  receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  transport  ion transport  sodium:inorganic phosphate symporter activity  sodium-dependent phosphate transmembrane transporter activity  membrane  phosphate ion transmembrane transport  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  viral entry into host cell  transmembrane transport  extracellular exosome  
Ontology : EGO-EBIvirus receptor activity  receptor activity  inorganic phosphate transmembrane transporter activity  sodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  transport  ion transport  sodium:inorganic phosphate symporter activity  sodium-dependent phosphate transmembrane transporter activity  membrane  phosphate ion transmembrane transport  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  viral entry into host cell  transmembrane transport  extracellular exosome  
NDEx NetworkSLC20A2
Atlas of Cancer Signalling NetworkSLC20A2
Wikipedia pathwaysSLC20A2
Orthology - Evolution
OrthoDB6575
GeneTree (enSembl)ENSG00000168575
Phylogenetic Trees/Animal Genes : TreeFamSLC20A2
Homologs : HomoloGeneSLC20A2
Homology/Alignments : Family Browser (UCSC)SLC20A2
Gene fusions - Rearrangements
Fusion: TCGACORO6 17q11.2 SLC20A2 8p11.21 SKCM
Fusion: TCGAFGFR1 8p11.23 SLC20A2 8p11.21 LUAD
Fusion: TCGAPIP5K1A 1q21.3 SLC20A2 8p11.21 LUSC
Fusion: TCGASLC20A2 8p11.21 AC130352.1 PRAD
Fusion: TCGASLC20A2 8p11.21 ANKH 5p15.2 HNSC
Fusion: TCGASLC20A2 8p11.21 DOCK8 9p24.3 BRCA
Fusion: TCGASLC20A2 8p11.21 FBXW7 4q31.3 LUSC
Fusion: TCGASLC20A2 8p11.21 HIP1 7q11.23 BRCA
Fusion: TCGASLC20A2 8p11.21 TUSC3 8p22 BRCA
Fusion: TCGASLC20A2 8p11.21 ZMAT4 8p11.21 LUSC
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC20A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC20A2
dbVarSLC20A2
ClinVarSLC20A2
1000_GenomesSLC20A2 
Exome Variant ServerSLC20A2
ExAC (Exome Aggregation Consortium)SLC20A2 (select the gene name)
Genetic variants : HAPMAP6575
Genomic Variants (DGV)SLC20A2 [DGVbeta]
Mutations
ICGC Data PortalSLC20A2 
TCGA Data PortalSLC20A2 
Broad Tumor PortalSLC20A2
OASIS PortalSLC20A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC20A2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch SLC20A2
DgiDB (Drug Gene Interaction Database)SLC20A2
DoCM (Curated mutations)SLC20A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC20A2 (select a term)
intoGenSLC20A2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:42273980-42358978  ENSG00000168575
CONAN: Copy Number AnalysisSLC20A2 
Mutations and Diseases : HGMDSLC20A2
OMIM158378    213600   
MedgenSLC20A2
Genetic Testing Registry SLC20A2
NextProtQ08357 [Medical]
TSGene6575
GENETestsSLC20A2
Huge Navigator SLC20A2 [HugePedia]
snp3D : Map Gene to Disease6575
BioCentury BCIQSLC20A2
ClinGenSLC20A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6575
Chemical/Pharm GKB GenePA35834
Clinical trialSLC20A2
Miscellaneous
canSAR (ICR)SLC20A2 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC20A2
EVEXSLC20A2
GoPubMedSLC20A2
iHOPSLC20A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:13:25 CEST 2016

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