Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC22A11 (solute carrier family 22 (organic anion/urate transporter), member 11)

Identity

Alias_namessolute carrier family 22 (organic anion/urate transporter), member 11
Alias_symbol (synonym)OAT4
Other aliashOAT4
HGNC (Hugo) SLC22A11
LocusID (NCBI) 55867
Atlas_Id 73315
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64323073 and ends at 64340347 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MYBPC1 (12q23.2) / SLC22A11 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A11   18120
Cards
Entrez_Gene (NCBI)SLC22A11  55867  solute carrier family 22 (organic anion/urate transporter), member 11
AliasesOAT4; hOAT4
GeneCards (Weizmann)SLC22A11
Ensembl hg19 (Hinxton)ENSG00000168065 [Gene_View]  chr11:64323073-64340347 [Contig_View]  SLC22A11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000168065 [Gene_View]  chr11:64323073-64340347 [Contig_View]  SLC22A11 [Vega]
ICGC DataPortalENSG00000168065
TCGA cBioPortalSLC22A11
AceView (NCBI)SLC22A11
Genatlas (Paris)SLC22A11
WikiGenes55867
SOURCE (Princeton)SLC22A11
Genetics Home Reference (NIH)SLC22A11
Genomic and cartography
GoldenPath hg19 (UCSC)SLC22A11  -     chr11:64323073-64340347 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC22A11  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblSLC22A11 - 11q13.1 [CytoView hg19]  SLC22A11 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISLC22A11 [Mapview hg19]  SLC22A11 [Mapview hg38]
OMIM607097   
Gene and transcription
Genbank (Entrez)AA331094 AB026116 AK075127 AK075224 AK129930
RefSeq transcript (Entrez)NM_001307985 NM_018484
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)SLC22A11
Cluster EST : UnigeneHs.657603 [ NCBI ]
CGAP (NCI)Hs.657603
Alternative Splicing GalleryENSG00000168065
Gene ExpressionSLC22A11 [ NCBI-GEO ]   SLC22A11 [ EBI - ARRAY_EXPRESS ]   SLC22A11 [ SEEK ]   SLC22A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55867
GTEX Portal (Tissue expression)SLC22A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSA0
Splice isoforms : SwissVarQ9NSA0
PhosPhoSitePlusQ9NSA0
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS_dom    Sub_transporter   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A11
DMDM Disease mutations55867
Blocks (Seattle)SLC22A11
SuperfamilyQ9NSA0
Human Protein AtlasENSG00000168065
Peptide AtlasQ9NSA0
HPRD06161
IPIIPI00020542   IPI00418660   IPI00385941   IPI00658026   IPI00657995   IPI00893050   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSA0
IntAct (EBI)Q9NSA0
FunCoupENSG00000168065
BioGRIDSLC22A11
STRING (EMBL)SLC22A11
ZODIACSLC22A11
Ontologies - Pathways
QuickGOQ9NSA0
Ontology : AmiGOinorganic anion exchanger activity  protein binding  plasma membrane  integral component of plasma membrane  organic anion transmembrane transporter activity  external side of plasma membrane  sodium-independent organic anion transmembrane transporter activity  organic anion transport  apical plasma membrane  urate metabolic process  transmembrane transport  extracellular exosome  anion transmembrane transport  
Ontology : EGO-EBIinorganic anion exchanger activity  protein binding  plasma membrane  integral component of plasma membrane  organic anion transmembrane transporter activity  external side of plasma membrane  sodium-independent organic anion transmembrane transporter activity  organic anion transport  apical plasma membrane  urate metabolic process  transmembrane transport  extracellular exosome  anion transmembrane transport  
NDEx NetworkSLC22A11
Atlas of Cancer Signalling NetworkSLC22A11
Wikipedia pathwaysSLC22A11
Orthology - Evolution
OrthoDB55867
GeneTree (enSembl)ENSG00000168065
Phylogenetic Trees/Animal Genes : TreeFamSLC22A11
HOVERGENQ9NSA0
HOGENOMQ9NSA0
Homologs : HomoloGeneSLC22A11
Homology/Alignments : Family Browser (UCSC)SLC22A11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A11
dbVarSLC22A11
ClinVarSLC22A11
1000_GenomesSLC22A11 
Exome Variant ServerSLC22A11
ExAC (Exome Aggregation Consortium)SLC22A11 (select the gene name)
Genetic variants : HAPMAP55867
Genomic Variants (DGV)SLC22A11 [DGVbeta]
DECIPHER (Syndromes)11:64323073-64340347  ENSG00000168065
CONAN: Copy Number AnalysisSLC22A11 
Mutations
ICGC Data PortalSLC22A11 
TCGA Data PortalSLC22A11 
Broad Tumor PortalSLC22A11
OASIS PortalSLC22A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A11
DgiDB (Drug Gene Interaction Database)SLC22A11
DoCM (Curated mutations)SLC22A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A11 (select a term)
intoGenSLC22A11
Cancer3DSLC22A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607097   
Orphanet
MedgenSLC22A11
Genetic Testing Registry SLC22A11
NextProtQ9NSA0 [Medical]
TSGene55867
GENETestsSLC22A11
Huge Navigator SLC22A11 [HugePedia]
snp3D : Map Gene to Disease55867
BioCentury BCIQSLC22A11
ClinGenSLC22A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55867
Chemical/Pharm GKB GenePA38295
Clinical trialSLC22A11
Miscellaneous
canSAR (ICR)SLC22A11 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A11
EVEXSLC22A11
GoPubMedSLC22A11
iHOPSLC22A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:24 CET 2017

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