Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLC22A11 (solute carrier family 22 member 11)

Identity

Alias (NCBI)OAT4
hOAT4
HGNC (Hugo) SLC22A11
HGNC Alias symbOAT4
HGNC Previous namesolute carrier family 22 (organic anion/urate transporter), member 11
LocusID (NCBI) 55867
Atlas_Id 73315
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64555601 and ends at 64572875 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MYBPC1 (12q23.2) / SLC22A11 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC22A11   18120
Cards
Entrez_Gene (NCBI)SLC22A11    solute carrier family 22 member 11
AliasesOAT4; hOAT4
GeneCards (Weizmann)SLC22A11
Ensembl hg19 (Hinxton)ENSG00000168065 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168065 [Gene_View]  ENSG00000168065 [Sequence]  chr11:64555601-64572875 [Contig_View]  SLC22A11 [Vega]
ICGC DataPortalENSG00000168065
TCGA cBioPortalSLC22A11
AceView (NCBI)SLC22A11
Genatlas (Paris)SLC22A11
SOURCE (Princeton)SLC22A11
Genetics Home Reference (NIH)SLC22A11
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A11  -     chr11:64555601-64572875 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A11  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathSLC22A11 - 11q13.1 [CytoView hg19]  SLC22A11 - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000168065
genome Data Viewer NCBISLC22A11 [Mapview hg19]  
OMIM607097   
Gene and transcription
Genbank (Entrez)AA331094 AB026116 AK075127 AK075224 AK129930
RefSeq transcript (Entrez)NM_001307985 NM_018484
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC22A11
Alternative Splicing GalleryENSG00000168065
Gene ExpressionSLC22A11 [ NCBI-GEO ]   SLC22A11 [ EBI - ARRAY_EXPRESS ]   SLC22A11 [ SEEK ]   SLC22A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A11 [ Firebrowse - Broad ]
GenevisibleExpression of SLC22A11 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55867
GTEX Portal (Tissue expression)SLC22A11
Human Protein AtlasENSG00000168065-SLC22A11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSA0
Splice isoforms : SwissVarQ9NSA0
PhosPhoSitePlusQ9NSA0
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    MFS_trans_sf   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A11
Blocks (Seattle)SLC22A11
SuperfamilyQ9NSA0
Human Protein Atlas [tissue]ENSG00000168065-SLC22A11 [tissue]
Peptide AtlasQ9NSA0
HPRD06161
IPIIPI00020542   IPI00418660   IPI00385941   IPI00658026   IPI00657995   IPI00893050   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSA0
IntAct (EBI)Q9NSA0
BioGRIDSLC22A11
STRING (EMBL)SLC22A11
ZODIACSLC22A11
Ontologies - Pathways
QuickGOQ9NSA0
Ontology : AmiGOinorganic anion exchanger activity  protein binding  plasma membrane  integral component of plasma membrane  organic anion transmembrane transporter activity  external side of plasma membrane  sodium-independent organic anion transmembrane transporter activity  inorganic anion transport  organic anion transport  organic anion transport  apical plasma membrane  urate metabolic process  transmembrane transport  extracellular exosome  
Ontology : EGO-EBIinorganic anion exchanger activity  protein binding  plasma membrane  integral component of plasma membrane  organic anion transmembrane transporter activity  external side of plasma membrane  sodium-independent organic anion transmembrane transporter activity  inorganic anion transport  organic anion transport  organic anion transport  apical plasma membrane  urate metabolic process  transmembrane transport  extracellular exosome  
NDEx NetworkSLC22A11
Atlas of Cancer Signalling NetworkSLC22A11
Wikipedia pathwaysSLC22A11
Orthology - Evolution
OrthoDB55867
GeneTree (enSembl)ENSG00000168065
Phylogenetic Trees/Animal Genes : TreeFamSLC22A11
HOGENOMQ9NSA0
Homologs : HomoloGeneSLC22A11
Homology/Alignments : Family Browser (UCSC)SLC22A11
Gene fusions - Rearrangements
Fusion : QuiverSLC22A11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A11 [hg38]
dbVarSLC22A11
ClinVarSLC22A11
MonarchSLC22A11
1000_GenomesSLC22A11 
Exome Variant ServerSLC22A11
GNOMAD BrowserENSG00000168065
Varsome BrowserSLC22A11
Genomic Variants (DGV)SLC22A11 [DGVbeta]
DECIPHERSLC22A11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A11 
Mutations
ICGC Data PortalSLC22A11 
TCGA Data PortalSLC22A11 
Broad Tumor PortalSLC22A11
OASIS PortalSLC22A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A11  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC22A11
Mutations and Diseases : HGMDSLC22A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A11
DgiDB (Drug Gene Interaction Database)SLC22A11
DoCM (Curated mutations)SLC22A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A11 (select a term)
intoGenSLC22A11
Cancer3DSLC22A11(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607097   
Orphanet
DisGeNETSLC22A11
MedgenSLC22A11
Genetic Testing Registry SLC22A11
NextProtQ9NSA0 [Medical]
GENETestsSLC22A11
Target ValidationSLC22A11
Huge Navigator SLC22A11 [HugePedia]
ClinGenSLC22A11
Clinical trials, drugs, therapy
MyCancerGenomeSLC22A11
Protein Interactions : CTD
Pharm GKB GenePA38295
Clinical trialSLC22A11
Miscellaneous
canSAR (ICR)SLC22A11 (select the gene name)
HarmonizomeSLC22A11
DataMed IndexSLC22A11
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A11
EVEXSLC22A11
GoPubMedSLC22A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:26:58 CET 2020
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