Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC22A13 (solute carrier family 22 member 13)

Identity

Alias_namesORCTL3
organic cationic transporter-like 3
solute carrier family 22 (organic anion transporter), member 13
solute carrier family 22 (organic anion/urate transporter), member 13
Alias_symbol (synonym)OCTL1
OCTL3
OAT10
Other aliasORCTL-3
HGNC (Hugo) SLC22A13
LocusID (NCBI) 9390
Atlas_Id 50999
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 38265807 and ends at 38278315 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A13   8494
Cards
Entrez_Gene (NCBI)SLC22A13  9390  solute carrier family 22 member 13
AliasesOAT10; OCTL1; OCTL3; ORCTL-3; 
ORCTL3
GeneCards (Weizmann)SLC22A13
Ensembl hg19 (Hinxton)ENSG00000172940 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172940 [Gene_View]  chr3:38265807-38278315 [Contig_View]  SLC22A13 [Vega]
ICGC DataPortalENSG00000172940
TCGA cBioPortalSLC22A13
AceView (NCBI)SLC22A13
Genatlas (Paris)SLC22A13
WikiGenes9390
SOURCE (Princeton)SLC22A13
Genetics Home Reference (NIH)SLC22A13
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A13  -     chr3:38265807-38278315 +  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A13  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblSLC22A13 - 3p22.2 [CytoView hg19]  SLC22A13 - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBISLC22A13 [Mapview hg19]  SLC22A13 [Mapview hg38]
OMIM604047   
Gene and transcription
Genbank (Entrez)AB010438 AK298375 AK315301 BC035973 DA629093
RefSeq transcript (Entrez)NM_004256
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC22A13
Cluster EST : UnigeneHs.225941 [ NCBI ]
CGAP (NCI)Hs.225941
Alternative Splicing GalleryENSG00000172940
Gene ExpressionSLC22A13 [ NCBI-GEO ]   SLC22A13 [ EBI - ARRAY_EXPRESS ]   SLC22A13 [ SEEK ]   SLC22A13 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9390
GTEX Portal (Tissue expression)SLC22A13
Human Protein AtlasENSG00000172940-SLC22A13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y226   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y226  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y226
Splice isoforms : SwissVarQ9Y226
PhosPhoSitePlusQ9Y226
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A13
DMDM Disease mutations9390
Blocks (Seattle)SLC22A13
SuperfamilyQ9Y226
Human Protein Atlas [tissue]ENSG00000172940-SLC22A13 [tissue]
Peptide AtlasQ9Y226
HPRD06810
IPIIPI00219845   IPI00735389   IPI00909468   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y226
IntAct (EBI)Q9Y226
FunCoupENSG00000172940
BioGRIDSLC22A13
STRING (EMBL)SLC22A13
ZODIACSLC22A13
Ontologies - Pathways
QuickGOQ9Y226
Ontology : AmiGOinorganic anion exchanger activity  plasma membrane  integral component of plasma membrane  integral component of plasma membrane  organic cation transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  organic cation transport  inorganic anion transport  urate transport  apical plasma membrane  NAD biosynthesis via nicotinamide riboside salvage pathway  sodium-independent organic anion transport  transmembrane transport  extracellular exosome  nicotinate transporter activity  nicotinate transporter activity  nicotinate transport  
Ontology : EGO-EBIinorganic anion exchanger activity  plasma membrane  integral component of plasma membrane  integral component of plasma membrane  organic cation transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  organic cation transport  inorganic anion transport  urate transport  apical plasma membrane  NAD biosynthesis via nicotinamide riboside salvage pathway  sodium-independent organic anion transport  transmembrane transport  extracellular exosome  nicotinate transporter activity  nicotinate transporter activity  nicotinate transport  
NDEx NetworkSLC22A13
Atlas of Cancer Signalling NetworkSLC22A13
Wikipedia pathwaysSLC22A13
Orthology - Evolution
OrthoDB9390
GeneTree (enSembl)ENSG00000172940
Phylogenetic Trees/Animal Genes : TreeFamSLC22A13
HOVERGENQ9Y226
HOGENOMQ9Y226
Homologs : HomoloGeneSLC22A13
Homology/Alignments : Family Browser (UCSC)SLC22A13
Gene fusions - Rearrangements
Tumor Fusion PortalSLC22A13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A13
dbVarSLC22A13
ClinVarSLC22A13
1000_GenomesSLC22A13 
Exome Variant ServerSLC22A13
ExAC (Exome Aggregation Consortium)ENSG00000172940
GNOMAD BrowserENSG00000172940
Genetic variants : HAPMAP9390
Genomic Variants (DGV)SLC22A13 [DGVbeta]
DECIPHERSLC22A13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A13 
Mutations
ICGC Data PortalSLC22A13 
TCGA Data PortalSLC22A13 
Broad Tumor PortalSLC22A13
OASIS PortalSLC22A13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A13
DgiDB (Drug Gene Interaction Database)SLC22A13
DoCM (Curated mutations)SLC22A13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A13 (select a term)
intoGenSLC22A13
Cancer3DSLC22A13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604047   
Orphanet
DisGeNETSLC22A13
MedgenSLC22A13
Genetic Testing Registry SLC22A13
NextProtQ9Y226 [Medical]
TSGene9390
GENETestsSLC22A13
Target ValidationSLC22A13
Huge Navigator SLC22A13 [HugePedia]
snp3D : Map Gene to Disease9390
BioCentury BCIQSLC22A13
ClinGenSLC22A13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9390
Chemical/Pharm GKB GenePA32814
Clinical trialSLC22A13
Miscellaneous
canSAR (ICR)SLC22A13 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A13
EVEXSLC22A13
GoPubMedSLC22A13
iHOPSLC22A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:34:54 CET 2017

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