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SLC22A15 (solute carrier family 22 member 15)

Identity

Alias (NCBI)FLIPT1
PRO34686
HGNC (Hugo) SLC22A15
HGNC Alias symbFLIPT1
HGNC Previous namesolute carrier family 22 (organic cation transporter), member 15
 solute carrier family 22, member 15
LocusID (NCBI) 55356
Atlas_Id 73318
Location 1p13.1  [Link to chromosome band 1p13]
Location_base_pair Starts at 115976513 and ends at 116070054 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP1A1 (1p13.1) / SLC22A15 (1p13.1)SDE2 (1q42.12) / SLC22A15 (1p13.1)SLC22A15 (1p13.1) / ANO1 (11q13.3)
VPS4B (18q21.33) / SLC22A15 (1p13.1)VPS4B SLC22A15C1orf55 SLC22A15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC22A15   20301
Cards
Entrez_Gene (NCBI)SLC22A15    solute carrier family 22 member 15
AliasesFLIPT1; PRO34686
GeneCards (Weizmann)SLC22A15
Ensembl hg19 (Hinxton)ENSG00000163393 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163393 [Gene_View]  ENSG00000163393 [Sequence]  chr1:115976513-116070054 [Contig_View]  SLC22A15 [Vega]
ICGC DataPortalENSG00000163393
TCGA cBioPortalSLC22A15
AceView (NCBI)SLC22A15
Genatlas (Paris)SLC22A15
SOURCE (Princeton)SLC22A15
Genetics Home Reference (NIH)SLC22A15
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A15  -     chr1:115976513-116070054 +  1p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A15  -     1p13.1   [Description]    (hg19-Feb_2009)
GoldenPathSLC22A15 - 1p13.1 [CytoView hg19]  SLC22A15 - 1p13.1 [CytoView hg38]
ImmunoBaseENSG00000163393
Genome Data Viewer NCBISLC22A15 [Mapview hg19]  
OMIM608275   
Gene and transcription
Genbank (Entrez)AK055633 AK125072 AL353933 AY145501 AY358258
RefSeq transcript (Entrez)NM_018420
Consensus coding sequences : CCDS (NCBI)SLC22A15
Gene ExpressionSLC22A15 [ NCBI-GEO ]   SLC22A15 [ EBI - ARRAY_EXPRESS ]   SLC22A15 [ SEEK ]   SLC22A15 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A15 [ Firebrowse - Broad ]
GenevisibleExpression of SLC22A15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55356
GTEX Portal (Tissue expression)SLC22A15
Human Protein AtlasENSG00000163393-SLC22A15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZD6
PhosPhoSitePlusQ8IZD6
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    MFS_trans_sf   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A15
SuperfamilyQ8IZD6
AlphaFold pdb e-kbQ8IZD6   
Human Protein Atlas [tissue]ENSG00000163393-SLC22A15 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8IZD6
IntAct (EBI)Q8IZD6
BioGRIDSLC22A15
STRING (EMBL)SLC22A15
ZODIACSLC22A15
Ontologies - Pathways
QuickGOQ8IZD6
Ontology : AmiGOmolecular_function  cellular_component  ion transport  biological_process  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBImolecular_function  cellular_component  ion transport  biological_process  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC22A15
Atlas of Cancer Signalling NetworkSLC22A15
Wikipedia pathwaysSLC22A15
Orthology - Evolution
OrthoDB55356
GeneTree (enSembl)ENSG00000163393
Phylogenetic Trees/Animal Genes : TreeFamSLC22A15
Homologs : HomoloGeneSLC22A15
Homology/Alignments : Family Browser (UCSC)SLC22A15
Gene fusions - Rearrangements
Fusion : QuiverSLC22A15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A15
dbVarSLC22A15
ClinVarSLC22A15
MonarchSLC22A15
1000_GenomesSLC22A15 
Exome Variant ServerSLC22A15
GNOMAD BrowserENSG00000163393
Varsome BrowserSLC22A15
ACMGSLC22A15 variants
VarityQ8IZD6
Genomic Variants (DGV)SLC22A15 [DGVbeta]
DECIPHERSLC22A15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A15 
Mutations
ICGC Data PortalSLC22A15 
TCGA Data PortalSLC22A15 
Broad Tumor PortalSLC22A15
OASIS PortalSLC22A15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A15  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC22A15
Mutations and Diseases : HGMDSLC22A15
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC22A15
DgiDB (Drug Gene Interaction Database)SLC22A15
DoCM (Curated mutations)SLC22A15
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A15
Cancer3DSLC22A15
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608275   
Orphanet
DisGeNETSLC22A15
MedgenSLC22A15
Genetic Testing Registry SLC22A15
NextProtQ8IZD6 [Medical]
GENETestsSLC22A15
Target ValidationSLC22A15
Huge Navigator SLC22A15 [HugePedia]
ClinGenSLC22A15
Clinical trials, drugs, therapy
MyCancerGenomeSLC22A15
Protein Interactions : CTDSLC22A15
Pharm GKB GenePA134870374
PharosQ8IZD6
Clinical trialSLC22A15
Miscellaneous
canSAR (ICR)SLC22A15
HarmonizomeSLC22A15
DataMed IndexSLC22A15
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC22A15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:46 CEST 2021

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