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SLC22A15 (solute carrier family 22 member 15)

Identity

Alias_namessolute carrier family 22 (organic cation transporter), member 15
solute carrier family 22, member 15
Alias_symbol (synonym)FLIPT1
Other aliasPRO34686
HGNC (Hugo) SLC22A15
LocusID (NCBI) 55356
Atlas_Id 73318
Location 1p13.1  [Link to chromosome band 1p13]
Location_base_pair Starts at 115976498 and ends at 116070054 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATP1A1 (1p13.1) / SLC22A15 (1p13.1)SDE2 (1q42.12) / SLC22A15 (1p13.1)SLC22A15 (1p13.1) / ANO1 (11q13.3)
VPS4B (18q21.33) / SLC22A15 (1p13.1)VPS4B SLC22A15C1orf55 SLC22A15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A15   20301
Cards
Entrez_Gene (NCBI)SLC22A15  55356  solute carrier family 22 member 15
AliasesFLIPT1; PRO34686
GeneCards (Weizmann)SLC22A15
Ensembl hg19 (Hinxton)ENSG00000163393 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163393 [Gene_View]  chr1:115976498-116070054 [Contig_View]  SLC22A15 [Vega]
ICGC DataPortalENSG00000163393
TCGA cBioPortalSLC22A15
AceView (NCBI)SLC22A15
Genatlas (Paris)SLC22A15
WikiGenes55356
SOURCE (Princeton)SLC22A15
Genetics Home Reference (NIH)SLC22A15
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A15  -     chr1:115976498-116070054 +  1p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A15  -     1p13.1   [Description]    (hg19-Feb_2009)
EnsemblSLC22A15 - 1p13.1 [CytoView hg19]  SLC22A15 - 1p13.1 [CytoView hg38]
Mapping of homologs : NCBISLC22A15 [Mapview hg19]  SLC22A15 [Mapview hg38]
OMIM608275   
Gene and transcription
Genbank (Entrez)AK055633 AK125072 AL353933 AY145501 AY358258
RefSeq transcript (Entrez)NM_018420
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC22A15
Cluster EST : UnigeneHs.125482 [ NCBI ]
CGAP (NCI)Hs.125482
Alternative Splicing GalleryENSG00000163393
Gene ExpressionSLC22A15 [ NCBI-GEO ]   SLC22A15 [ EBI - ARRAY_EXPRESS ]   SLC22A15 [ SEEK ]   SLC22A15 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55356
GTEX Portal (Tissue expression)SLC22A15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZD6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZD6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZD6
Splice isoforms : SwissVarQ8IZD6
PhosPhoSitePlusQ8IZD6
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A15
DMDM Disease mutations55356
Blocks (Seattle)SLC22A15
SuperfamilyQ8IZD6
Human Protein AtlasENSG00000163393
Peptide AtlasQ8IZD6
IPIIPI00217982   IPI00641708   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZD6
IntAct (EBI)Q8IZD6
FunCoupENSG00000163393
BioGRIDSLC22A15
STRING (EMBL)SLC22A15
ZODIACSLC22A15
Ontologies - Pathways
QuickGOQ8IZD6
Ontology : AmiGOorganic anion transmembrane transporter activity  organic anion transport  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIorganic anion transmembrane transporter activity  organic anion transport  integral component of membrane  transmembrane transport  
NDEx NetworkSLC22A15
Atlas of Cancer Signalling NetworkSLC22A15
Wikipedia pathwaysSLC22A15
Orthology - Evolution
OrthoDB55356
GeneTree (enSembl)ENSG00000163393
Phylogenetic Trees/Animal Genes : TreeFamSLC22A15
HOVERGENQ8IZD6
HOGENOMQ8IZD6
Homologs : HomoloGeneSLC22A15
Homology/Alignments : Family Browser (UCSC)SLC22A15
Gene fusions - Rearrangements
Fusion: TCGAVPS4B SLC22A15
Fusion: TCGAC1orf55 SLC22A15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A15
dbVarSLC22A15
ClinVarSLC22A15
1000_GenomesSLC22A15 
Exome Variant ServerSLC22A15
ExAC (Exome Aggregation Consortium)SLC22A15 (select the gene name)
Genetic variants : HAPMAP55356
Genomic Variants (DGV)SLC22A15 [DGVbeta]
DECIPHERSLC22A15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A15 
Mutations
ICGC Data PortalSLC22A15 
TCGA Data PortalSLC22A15 
Broad Tumor PortalSLC22A15
OASIS PortalSLC22A15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A15
DgiDB (Drug Gene Interaction Database)SLC22A15
DoCM (Curated mutations)SLC22A15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A15 (select a term)
intoGenSLC22A15
Cancer3DSLC22A15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608275   
Orphanet
MedgenSLC22A15
Genetic Testing Registry SLC22A15
NextProtQ8IZD6 [Medical]
TSGene55356
GENETestsSLC22A15
Target ValidationSLC22A15
Huge Navigator SLC22A15 [HugePedia]
snp3D : Map Gene to Disease55356
BioCentury BCIQSLC22A15
ClinGenSLC22A15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55356
Chemical/Pharm GKB GenePA134870374
Clinical trialSLC22A15
Miscellaneous
canSAR (ICR)SLC22A15 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A15
EVEXSLC22A15
GoPubMedSLC22A15
iHOPSLC22A15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:58 CEST 2017

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