Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC22A17 (solute carrier family 22 member 17)

Identity

Alias_namessolute carrier family 22
Alias_symbol (synonym)BOCT
BOIT
NGALR
Other alias24p3R
NGALR2
NGALR3
hBOIT
HGNC (Hugo) SLC22A17
LocusID (NCBI) 51310
Atlas_Id 50715
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23346311 and ends at 23352451 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATG2B (14q32.2) / SLC22A17 (14q11.2)FRMD4B (3p14.1) / SLC22A17 (14q11.2)RALGPS2 (1q25.2) / SLC22A17 (14q11.2)
ATG2B 14q32.2 / SLC22A17 14q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A17   23095
Cards
Entrez_Gene (NCBI)SLC22A17  51310  solute carrier family 22 member 17
Aliases24p3R; BOCT; BOIT; NGALR; 
NGALR2; NGALR3; hBOIT
GeneCards (Weizmann)SLC22A17
Ensembl hg19 (Hinxton)ENSG00000092096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000092096 [Gene_View]  chr14:23346311-23352451 [Contig_View]  SLC22A17 [Vega]
ICGC DataPortalENSG00000092096
TCGA cBioPortalSLC22A17
AceView (NCBI)SLC22A17
Genatlas (Paris)SLC22A17
WikiGenes51310
SOURCE (Princeton)SLC22A17
Genetics Home Reference (NIH)SLC22A17
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A17  -     chr14:23346311-23352451 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A17  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblSLC22A17 - 14q11.2 [CytoView hg19]  SLC22A17 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBISLC22A17 [Mapview hg19]  SLC22A17 [Mapview hg38]
OMIM611461   
Gene and transcription
Genbank (Entrez)AJ243653 AK308661 AK311241 BC020565 BC030559
RefSeq transcript (Entrez)NM_001289050 NM_016609 NM_020372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC22A17
Cluster EST : UnigeneHs.373498 [ NCBI ]
CGAP (NCI)Hs.373498
Alternative Splicing GalleryENSG00000092096
Gene ExpressionSLC22A17 [ NCBI-GEO ]   SLC22A17 [ EBI - ARRAY_EXPRESS ]   SLC22A17 [ SEEK ]   SLC22A17 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51310
GTEX Portal (Tissue expression)SLC22A17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUG5
Splice isoforms : SwissVarQ8WUG5
PhosPhoSitePlusQ8WUG5
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_1 (PS00216)   
Domains : Interpro (EBI)MFS_dom    MFS_sugar_transport-like    Sugar_transporter_CS   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A17
DMDM Disease mutations51310
Blocks (Seattle)SLC22A17
SuperfamilyQ8WUG5
Human Protein AtlasENSG00000092096
Peptide AtlasQ8WUG5
HPRD15349
IPIIPI00102916   IPI00398852   IPI00845231   IPI00789248   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUG5
IntAct (EBI)Q8WUG5
FunCoupENSG00000092096
BioGRIDSLC22A17
STRING (EMBL)SLC22A17
ZODIACSLC22A17
Ontologies - Pathways
QuickGOQ8WUG5
Ontology : AmiGOtransmembrane signaling receptor activity  vacuolar membrane  plasma membrane  integral component of plasma membrane  cellular iron ion homeostasis  signal transduction  organic anion transmembrane transporter activity  organic anion transport  siderophore transport  transmembrane transporter activity  integral component of organelle membrane  transmembrane transport  
Ontology : EGO-EBItransmembrane signaling receptor activity  vacuolar membrane  plasma membrane  integral component of plasma membrane  cellular iron ion homeostasis  signal transduction  organic anion transmembrane transporter activity  organic anion transport  siderophore transport  transmembrane transporter activity  integral component of organelle membrane  transmembrane transport  
NDEx NetworkSLC22A17
Atlas of Cancer Signalling NetworkSLC22A17
Wikipedia pathwaysSLC22A17
Orthology - Evolution
OrthoDB51310
GeneTree (enSembl)ENSG00000092096
Phylogenetic Trees/Animal Genes : TreeFamSLC22A17
HOVERGENQ8WUG5
HOGENOMQ8WUG5
Homologs : HomoloGeneSLC22A17
Homology/Alignments : Family Browser (UCSC)SLC22A17
Gene fusions - Rearrangements
Fusion : MitelmanATG2B/SLC22A17 [14q32.2/14q11.2]  [t(14;14)(q11;q32)]  
Fusion: TCGAATG2B 14q32.2 SLC22A17 14q11.2 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A17
dbVarSLC22A17
ClinVarSLC22A17
1000_GenomesSLC22A17 
Exome Variant ServerSLC22A17
ExAC (Exome Aggregation Consortium)SLC22A17 (select the gene name)
Genetic variants : HAPMAP51310
Genomic Variants (DGV)SLC22A17 [DGVbeta]
DECIPHERSLC22A17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A17 
Mutations
ICGC Data PortalSLC22A17 
TCGA Data PortalSLC22A17 
Broad Tumor PortalSLC22A17
OASIS PortalSLC22A17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A17
DgiDB (Drug Gene Interaction Database)SLC22A17
DoCM (Curated mutations)SLC22A17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A17 (select a term)
intoGenSLC22A17
Cancer3DSLC22A17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611461   
Orphanet
MedgenSLC22A17
Genetic Testing Registry SLC22A17
NextProtQ8WUG5 [Medical]
TSGene51310
GENETestsSLC22A17
Target ValidationSLC22A17
Huge Navigator SLC22A17 [HugePedia]
snp3D : Map Gene to Disease51310
BioCentury BCIQSLC22A17
ClinGenSLC22A17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51310
Chemical/Pharm GKB GenePA134879149
Clinical trialSLC22A17
Miscellaneous
canSAR (ICR)SLC22A17 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A17
EVEXSLC22A17
GoPubMedSLC22A17
iHOPSLC22A17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:55:49 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.