Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC22A18AS (solute carrier family 22 member 18 antisense)

Identity

Alias (NCBI)BWR1B
BWSCR1B
ORCTL2S
SLC22A1LS
p27-BWR1B
HGNC (Hugo) SLC22A18AS
HGNC Alias symbBWR1B
p27-BWR1B
HGNC Previous nameBWSCR1B
 ORCTL2S
 SLC22A1LS
HGNC Previous namesolute carrier family 22 (organic cation transporter), member 1-like antisense
 solute carrier family 22 (organic cation transporter), member 18 antisense
LocusID (NCBI) 5003
Atlas_Id 73319
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 2887345 and ends at 2903945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SLC22A18AS   10965
Cards
Entrez_Gene (NCBI)SLC22A18AS    solute carrier family 22 member 18 antisense
AliasesBWR1B; BWSCR1B; ORCTL2S; SLC22A1LS; 
p27-BWR1B
GeneCards (Weizmann)SLC22A18AS
Ensembl hg19 (Hinxton)ENSG00000254827 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254827 [Gene_View]  ENSG00000254827 [Sequence]  chr11:2887345-2903945 [Contig_View]  SLC22A18AS [Vega]
ICGC DataPortalENSG00000254827
TCGA cBioPortalSLC22A18AS
AceView (NCBI)SLC22A18AS
Genatlas (Paris)SLC22A18AS
SOURCE (Princeton)SLC22A18AS
Genetics Home Reference (NIH)SLC22A18AS
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A18AS  -     chr11:2887345-2903945 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A18AS  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathSLC22A18AS - 11p15.4 [CytoView hg19]  SLC22A18AS - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000254827
genome Data Viewer NCBISLC22A18AS [Mapview hg19]  
OMIM603240   
Gene and transcription
Genbank (Entrez)AF035407 AF037066 AW188584 BC030237
RefSeq transcript (Entrez)NM_001302862 NM_007105
RefSeq genomic (Entrez)NC_000011 NT_187585
Consensus coding sequences : CCDS (NCBI)SLC22A18AS
Alternative Splicing GalleryENSG00000254827
Gene ExpressionSLC22A18AS [ NCBI-GEO ]   SLC22A18AS [ EBI - ARRAY_EXPRESS ]   SLC22A18AS [ SEEK ]   SLC22A18AS [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A18AS [ Firebrowse - Broad ]
GenevisibleExpression of SLC22A18AS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5003
GTEX Portal (Tissue expression)SLC22A18AS
Human Protein AtlasENSG00000254827-SLC22A18AS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1D0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1D0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1D0
Splice isoforms : SwissVarQ8N1D0
PhosPhoSitePlusQ8N1D0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC22A18AS
Blocks (Seattle)SLC22A18AS
SuperfamilyQ8N1D0
Human Protein Atlas [tissue]ENSG00000254827-SLC22A18AS [tissue]
Peptide AtlasQ8N1D0
HPRD09127
IPIIPI00026668   IPI00656054   IPI01008884   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1D0
IntAct (EBI)Q8N1D0
BioGRIDSLC22A18AS
STRING (EMBL)SLC22A18AS
ZODIACSLC22A18AS
Ontologies - Pathways
QuickGOQ8N1D0
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkSLC22A18AS
Atlas of Cancer Signalling NetworkSLC22A18AS
Wikipedia pathwaysSLC22A18AS
Orthology - Evolution
OrthoDB5003
GeneTree (enSembl)ENSG00000254827
Phylogenetic Trees/Animal Genes : TreeFamSLC22A18AS
HOGENOMQ8N1D0
Homologs : HomoloGeneSLC22A18AS
Homology/Alignments : Family Browser (UCSC)SLC22A18AS
Gene fusions - Rearrangements
Fusion : QuiverSLC22A18AS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A18AS [hg38]
dbVarSLC22A18AS
ClinVarSLC22A18AS
MonarchSLC22A18AS
1000_GenomesSLC22A18AS 
Exome Variant ServerSLC22A18AS
GNOMAD BrowserENSG00000254827
Varsome BrowserSLC22A18AS
Genomic Variants (DGV)SLC22A18AS [DGVbeta]
DECIPHERSLC22A18AS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A18AS 
Mutations
ICGC Data PortalSLC22A18AS 
TCGA Data PortalSLC22A18AS 
Broad Tumor PortalSLC22A18AS
OASIS PortalSLC22A18AS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A18AS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC22A18AS
Mutations and Diseases : HGMDSLC22A18AS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A18AS
DgiDB (Drug Gene Interaction Database)SLC22A18AS
DoCM (Curated mutations)SLC22A18AS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A18AS (select a term)
intoGenSLC22A18AS
Cancer3DSLC22A18AS(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603240   
Orphanet
DisGeNETSLC22A18AS
MedgenSLC22A18AS
Genetic Testing Registry SLC22A18AS
NextProtQ8N1D0 [Medical]
GENETestsSLC22A18AS
Target ValidationSLC22A18AS
Huge Navigator SLC22A18AS [HugePedia]
ClinGenSLC22A18AS
Clinical trials, drugs, therapy
MyCancerGenomeSLC22A18AS
Protein Interactions : CTD
Pharm GKB GenePA35847
Clinical trialSLC22A18AS
Miscellaneous
canSAR (ICR)SLC22A18AS (select the gene name)
HarmonizomeSLC22A18AS
DataMed IndexSLC22A18AS
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A18AS
EVEXSLC22A18AS
GoPubMedSLC22A18AS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:26:58 CET 2020

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