Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC22A18AS (solute carrier family 22 member 18 antisense)

Identity

Alias_namesBWSCR1B
ORCTL2S
SLC22A1LS
solute carrier family 22 (organic cation transporter), member 1-like antisense
solute carrier family 22 (organic cation transporter), member 18 antisense
Alias_symbol (synonym)BWR1B
p27-BWR1B
Other alias
HGNC (Hugo) SLC22A18AS
LocusID (NCBI) 5003
Atlas_Id 73319
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 2887345 and ends at 2903945 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC22A18AS   10965
Cards
Entrez_Gene (NCBI)SLC22A18AS  5003  solute carrier family 22 member 18 antisense
AliasesBWR1B; BWSCR1B; ORCTL2S; SLC22A1LS; 
p27-BWR1B
GeneCards (Weizmann)SLC22A18AS
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:2887345-2903945 [Contig_View]  SLC22A18AS [Vega]
TCGA cBioPortalSLC22A18AS
AceView (NCBI)SLC22A18AS
Genatlas (Paris)SLC22A18AS
WikiGenes5003
SOURCE (Princeton)SLC22A18AS
Genetics Home Reference (NIH)SLC22A18AS
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A18AS  -     chr11:2887345-2903945 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A18AS  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblSLC22A18AS - 11p15.4 [CytoView hg19]  SLC22A18AS - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBISLC22A18AS [Mapview hg19]  SLC22A18AS [Mapview hg38]
OMIM603240   
Gene and transcription
Genbank (Entrez)AF035407 AF037066 AW188584 BC030237
RefSeq transcript (Entrez)NM_001302862 NM_007105
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187585
Consensus coding sequences : CCDS (NCBI)SLC22A18AS
Cluster EST : UnigeneHs.716010 [ NCBI ]
CGAP (NCI)Hs.716010
Gene ExpressionSLC22A18AS [ NCBI-GEO ]   SLC22A18AS [ EBI - ARRAY_EXPRESS ]   SLC22A18AS [ SEEK ]   SLC22A18AS [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A18AS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5003
GTEX Portal (Tissue expression)SLC22A18AS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1D0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1D0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1D0
Splice isoforms : SwissVarQ8N1D0
PhosPhoSitePlusQ8N1D0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC22A18AS
DMDM Disease mutations5003
Blocks (Seattle)SLC22A18AS
SuperfamilyQ8N1D0
Peptide AtlasQ8N1D0
HPRD09127
IPIIPI00026668   IPI00656054   IPI01008884   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1D0
IntAct (EBI)Q8N1D0
BioGRIDSLC22A18AS
STRING (EMBL)SLC22A18AS
ZODIACSLC22A18AS
Ontologies - Pathways
QuickGOQ8N1D0
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkSLC22A18AS
Atlas of Cancer Signalling NetworkSLC22A18AS
Wikipedia pathwaysSLC22A18AS
Orthology - Evolution
OrthoDB5003
Phylogenetic Trees/Animal Genes : TreeFamSLC22A18AS
HOVERGENQ8N1D0
HOGENOMQ8N1D0
Homologs : HomoloGeneSLC22A18AS
Homology/Alignments : Family Browser (UCSC)SLC22A18AS
Gene fusions - Rearrangements
Fusion : QuiverSLC22A18AS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A18AS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A18AS
dbVarSLC22A18AS
ClinVarSLC22A18AS
1000_GenomesSLC22A18AS 
Exome Variant ServerSLC22A18AS
Genetic variants : HAPMAP5003
Genomic Variants (DGV)SLC22A18AS [DGVbeta]
DECIPHERSLC22A18AS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A18AS 
Mutations
ICGC Data PortalSLC22A18AS 
TCGA Data PortalSLC22A18AS 
Broad Tumor PortalSLC22A18AS
OASIS PortalSLC22A18AS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A18AS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A18AS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A18AS
DgiDB (Drug Gene Interaction Database)SLC22A18AS
DoCM (Curated mutations)SLC22A18AS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A18AS (select a term)
intoGenSLC22A18AS
Cancer3DSLC22A18AS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603240   
Orphanet
DisGeNETSLC22A18AS
MedgenSLC22A18AS
Genetic Testing Registry SLC22A18AS
NextProtQ8N1D0 [Medical]
TSGene5003
GENETestsSLC22A18AS
Target ValidationSLC22A18AS
Huge Navigator SLC22A18AS [HugePedia]
snp3D : Map Gene to Disease5003
BioCentury BCIQSLC22A18AS
ClinGenSLC22A18AS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5003
Chemical/Pharm GKB GenePA35847
Clinical trialSLC22A18AS
Miscellaneous
canSAR (ICR)SLC22A18AS (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A18AS
EVEXSLC22A18AS
GoPubMedSLC22A18AS
iHOPSLC22A18AS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:51:26 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.