Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC22A20 (solute carrier family 22, member 20)

Identity

Alias_namessolute carrier family 22, member 20
Alias_symbol (synonym)Oat6
FLJ16331
Other alias
HGNC (Hugo) SLC22A20
LocusID (NCBI) 440044
Atlas_Id 73320
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64981311 and ends at 64993511 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A20   29867
Cards
Entrez_Gene (NCBI)SLC22A20  440044  solute carrier family 22, member 20
AliasesOat6
GeneCards (Weizmann)SLC22A20
Ensembl hg19 (Hinxton) [Gene_View]  chr11:64981311-64993511 [Contig_View]  SLC22A20 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:64981311-64993511 [Contig_View]  SLC22A20 [Vega]
TCGA cBioPortalSLC22A20
AceView (NCBI)SLC22A20
Genatlas (Paris)SLC22A20
WikiGenes440044
SOURCE (Princeton)SLC22A20
Genetics Home Reference (NIH)SLC22A20
Genomic and cartography
GoldenPath hg19 (UCSC)SLC22A20  -     chr11:64981311-64993511 +  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC22A20  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblSLC22A20 - 11q13.1 [CytoView hg19]  SLC22A20 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISLC22A20 [Mapview hg19]  SLC22A20 [Mapview hg38]
OMIM611696   
Gene and transcription
Genbank (Entrez)AK094565 AK131327 BC146850 BM826695 DN831898
RefSeq transcript (Entrez)NM_001004326
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)SLC22A20
Cluster EST : UnigeneHs.532372 [ NCBI ]
CGAP (NCI)Hs.532372
Gene ExpressionSLC22A20 [ NCBI-GEO ]   SLC22A20 [ EBI - ARRAY_EXPRESS ]   SLC22A20 [ SEEK ]   SLC22A20 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440044
GTEX Portal (Tissue expression)SLC22A20
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NK97   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NK97  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NK97
Splice isoforms : SwissVarA6NK97
PhosPhoSitePlusA6NK97
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS_dom    Sub_transporter   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A20
DMDM Disease mutations440044
Blocks (Seattle)SLC22A20
SuperfamilyA6NK97
Peptide AtlasA6NK97
HPRD16913
IPIIPI00783068   IPI00418585   IPI00939612   
Protein Interaction databases
DIP (DOE-UCLA)A6NK97
IntAct (EBI)A6NK97
BioGRIDSLC22A20
STRING (EMBL)SLC22A20
ZODIACSLC22A20
Ontologies - Pathways
QuickGOA6NK97
Ontology : AmiGOion transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBIion transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC22A20
Atlas of Cancer Signalling NetworkSLC22A20
Wikipedia pathwaysSLC22A20
Orthology - Evolution
OrthoDB440044
Phylogenetic Trees/Animal Genes : TreeFamSLC22A20
HOVERGENA6NK97
HOGENOMA6NK97
Homologs : HomoloGeneSLC22A20
Homology/Alignments : Family Browser (UCSC)SLC22A20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A20
dbVarSLC22A20
ClinVarSLC22A20
1000_GenomesSLC22A20 
Exome Variant ServerSLC22A20
ExAC (Exome Aggregation Consortium)SLC22A20 (select the gene name)
Genetic variants : HAPMAP440044
Genomic Variants (DGV)SLC22A20 [DGVbeta]
DECIPHER (Syndromes)11:64981311-64993511  
CONAN: Copy Number AnalysisSLC22A20 
Mutations
ICGC Data PortalSLC22A20 
TCGA Data PortalSLC22A20 
Broad Tumor PortalSLC22A20
OASIS PortalSLC22A20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A20
DgiDB (Drug Gene Interaction Database)SLC22A20
DoCM (Curated mutations)SLC22A20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A20 (select a term)
intoGenSLC22A20
Cancer3DSLC22A20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611696   
Orphanet
MedgenSLC22A20
Genetic Testing Registry SLC22A20
NextProtA6NK97 [Medical]
TSGene440044
GENETestsSLC22A20
Huge Navigator SLC22A20 [HugePedia]
snp3D : Map Gene to Disease440044
BioCentury BCIQSLC22A20
ClinGenSLC22A20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440044
Chemical/Pharm GKB GenePA162403493
Clinical trialSLC22A20
Miscellaneous
canSAR (ICR)SLC22A20 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A20
EVEXSLC22A20
GoPubMedSLC22A20
iHOPSLC22A20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:25 CET 2017

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