Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC22A25 (solute carrier family 22 member 25)

Identity

Alias_namesMGI:2442751, MGI:2385316, MGI:3042283, MGI:3645714, MGI:3605624, MGI:2442750
solute carrier family 22, member 25
Alias_symbol (synonym)UST6
HIMTP
MGC120420
Other alias
HGNC (Hugo) SLC22A25
LocusID (NCBI) 387601
Atlas_Id 73322
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 63163824 and ends at 63229652 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC22A25 (11q12.3) / PACS1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A25   32935
Cards
Entrez_Gene (NCBI)SLC22A25  387601  solute carrier family 22 member 25
AliasesHIMTP; UST6
GeneCards (Weizmann)SLC22A25
Ensembl hg19 (Hinxton)ENSG00000196600 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196600 [Gene_View]  chr11:63163824-63229652 [Contig_View]  SLC22A25 [Vega]
ICGC DataPortalENSG00000196600
TCGA cBioPortalSLC22A25
AceView (NCBI)SLC22A25
Genatlas (Paris)SLC22A25
WikiGenes387601
SOURCE (Princeton)SLC22A25
Genetics Home Reference (NIH)SLC22A25
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A25  -     chr11:63163824-63229652 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A25  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblSLC22A25 - 11q12.3 [CytoView hg19]  SLC22A25 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISLC22A25 [Mapview hg19]  SLC22A25 [Mapview hg38]
OMIM610792   
Gene and transcription
Genbank (Entrez)AA010320 AK091990 AK127610 AV660430 AY437532
RefSeq transcript (Entrez)NM_199352
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC22A25
Cluster EST : UnigeneHs.332119 [ NCBI ]
CGAP (NCI)Hs.332119
Alternative Splicing GalleryENSG00000196600
Gene ExpressionSLC22A25 [ NCBI-GEO ]   SLC22A25 [ EBI - ARRAY_EXPRESS ]   SLC22A25 [ SEEK ]   SLC22A25 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387601
GTEX Portal (Tissue expression)SLC22A25
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6T423   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6T423  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6T423
Splice isoforms : SwissVarQ6T423
PhosPhoSitePlusQ6T423
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC22A25
DMDM Disease mutations387601
Blocks (Seattle)SLC22A25
SuperfamilyQ6T423
Human Protein AtlasENSG00000196600
Peptide AtlasQ6T423
HPRD14198
IPIIPI00419185   IPI00845475   IPI00644006   IPI00743255   
Protein Interaction databases
DIP (DOE-UCLA)Q6T423
IntAct (EBI)Q6T423
FunCoupENSG00000196600
BioGRIDSLC22A25
STRING (EMBL)SLC22A25
ZODIACSLC22A25
Ontologies - Pathways
QuickGOQ6T423
Ontology : AmiGOinorganic anion exchanger activity  integral component of plasma membrane  urate transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  inorganic anion transport  urate transport  sodium-independent organic anion transport  organic acid transmembrane transport  
Ontology : EGO-EBIinorganic anion exchanger activity  integral component of plasma membrane  urate transmembrane transporter activity  sodium-independent organic anion transmembrane transporter activity  inorganic anion transport  urate transport  sodium-independent organic anion transport  organic acid transmembrane transport  
NDEx NetworkSLC22A25
Atlas of Cancer Signalling NetworkSLC22A25
Wikipedia pathwaysSLC22A25
Orthology - Evolution
OrthoDB387601
GeneTree (enSembl)ENSG00000196600
Phylogenetic Trees/Animal Genes : TreeFamSLC22A25
HOVERGENQ6T423
HOGENOMQ6T423
Homologs : HomoloGeneSLC22A25
Homology/Alignments : Family Browser (UCSC)SLC22A25
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A25
dbVarSLC22A25
ClinVarSLC22A25
1000_GenomesSLC22A25 
Exome Variant ServerSLC22A25
ExAC (Exome Aggregation Consortium)SLC22A25 (select the gene name)
Genetic variants : HAPMAP387601
Genomic Variants (DGV)SLC22A25 [DGVbeta]
DECIPHERSLC22A25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A25 
Mutations
ICGC Data PortalSLC22A25 
TCGA Data PortalSLC22A25 
Broad Tumor PortalSLC22A25
OASIS PortalSLC22A25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A25
DgiDB (Drug Gene Interaction Database)SLC22A25
DoCM (Curated mutations)SLC22A25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A25 (select a term)
intoGenSLC22A25
Cancer3DSLC22A25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610792   
Orphanet
MedgenSLC22A25
Genetic Testing Registry SLC22A25
NextProtQ6T423 [Medical]
TSGene387601
GENETestsSLC22A25
Target ValidationSLC22A25
Huge Navigator SLC22A25 [HugePedia]
snp3D : Map Gene to Disease387601
BioCentury BCIQSLC22A25
ClinGenSLC22A25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387601
Chemical/Pharm GKB GenePA162403567
Clinical trialSLC22A25
Miscellaneous
canSAR (ICR)SLC22A25 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A25
EVEXSLC22A25
GoPubMedSLC22A25
iHOPSLC22A25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:59 CEST 2017

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