Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC22A31 (solute carrier family 22, member 31)

Identity

Alias_namessolute carrier family 22, member 31
Other alias-
HGNC (Hugo) SLC22A31
LocusID (NCBI) 146429
Atlas_Id 73323
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89262169 and ends at 89266529 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A31   27091
Cards
Entrez_Gene (NCBI)SLC22A31  146429  solute carrier family 22, member 31
Aliases
GeneCards (Weizmann)SLC22A31
Ensembl hg19 (Hinxton)ENSG00000259803 [Gene_View]  chr16:89262169-89266529 [Contig_View]  SLC22A31 [Vega]
Ensembl hg38 (Hinxton)ENSG00000259803 [Gene_View]  chr16:89262169-89266529 [Contig_View]  SLC22A31 [Vega]
ICGC DataPortalENSG00000259803
TCGA cBioPortalSLC22A31
AceView (NCBI)SLC22A31
Genatlas (Paris)SLC22A31
WikiGenes146429
SOURCE (Princeton)SLC22A31
Genetics Home Reference (NIH)SLC22A31
Genomic and cartography
GoldenPath hg19 (UCSC)SLC22A31  -     chr16:89262169-89266529 -  16q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC22A31  -     16q24.3   [Description]    (hg38-Dec_2013)
EnsemblSLC22A31 - 16q24.3 [CytoView hg19]  SLC22A31 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBISLC22A31 [Mapview hg19]  SLC22A31 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL137382
RefSeq transcript (Entrez)NM_001242757
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929403
Consensus coding sequences : CCDS (NCBI)SLC22A31
Cluster EST : UnigeneHs.743726 [ NCBI ]
CGAP (NCI)Hs.743726
Alternative Splicing GalleryENSG00000259803
Gene ExpressionSLC22A31 [ NCBI-GEO ]   SLC22A31 [ EBI - ARRAY_EXPRESS ]   SLC22A31 [ SEEK ]   SLC22A31 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146429
GTEX Portal (Tissue expression)SLC22A31
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKX4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKX4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKX4
Splice isoforms : SwissVarA6NKX4
PhosPhoSitePlusA6NKX4
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS_dom    Sub_transporter   
Domain families : Pfam (Sanger)Sugar_tr (PF00083)   
Domain families : Pfam (NCBI)pfam00083   
Conserved Domain (NCBI)SLC22A31
DMDM Disease mutations146429
Blocks (Seattle)SLC22A31
SuperfamilyA6NKX4
Human Protein AtlasENSG00000259803
Peptide AtlasA6NKX4
IPIIPI00373862   
Protein Interaction databases
DIP (DOE-UCLA)A6NKX4
IntAct (EBI)A6NKX4
FunCoupENSG00000259803
BioGRIDSLC22A31
STRING (EMBL)SLC22A31
ZODIACSLC22A31
Ontologies - Pathways
QuickGOA6NKX4
Ontology : AmiGOion transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBIion transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC22A31
Atlas of Cancer Signalling NetworkSLC22A31
Wikipedia pathwaysSLC22A31
Orthology - Evolution
OrthoDB146429
GeneTree (enSembl)ENSG00000259803
Phylogenetic Trees/Animal Genes : TreeFamSLC22A31
HOVERGENA6NKX4
HOGENOMA6NKX4
Homologs : HomoloGeneSLC22A31
Homology/Alignments : Family Browser (UCSC)SLC22A31
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A31
dbVarSLC22A31
ClinVarSLC22A31
1000_GenomesSLC22A31 
Exome Variant ServerSLC22A31
ExAC (Exome Aggregation Consortium)SLC22A31 (select the gene name)
Genetic variants : HAPMAP146429
Genomic Variants (DGV)SLC22A31 [DGVbeta]
DECIPHER (Syndromes)16:89262169-89266529  ENSG00000259803
CONAN: Copy Number AnalysisSLC22A31 
Mutations
ICGC Data PortalSLC22A31 
TCGA Data PortalSLC22A31 
Broad Tumor PortalSLC22A31
OASIS PortalSLC22A31 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC22A31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A31
DgiDB (Drug Gene Interaction Database)SLC22A31
DoCM (Curated mutations)SLC22A31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A31 (select a term)
intoGenSLC22A31
Cancer3DSLC22A31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC22A31
Genetic Testing Registry SLC22A31
NextProtA6NKX4 [Medical]
TSGene146429
GENETestsSLC22A31
Huge Navigator SLC22A31 [HugePedia]
snp3D : Map Gene to Disease146429
BioCentury BCIQSLC22A31
ClinGenSLC22A31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146429
Clinical trialSLC22A31
Miscellaneous
canSAR (ICR)SLC22A31 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A31
EVEXSLC22A31
GoPubMedSLC22A31
iHOPSLC22A31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:26 CET 2017

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