Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC22A7 (solute carrier family 22 member 7)

Identity

Alias_namessolute carrier family 22 (organic anion transporter)
Alias_symbol (synonym)NLT
OAT2
Other alias
HGNC (Hugo) SLC22A7
LocusID (NCBI) 10864
Atlas_Id 54990
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43265998 and ends at 43273276 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A7   10971
Cards
Entrez_Gene (NCBI)SLC22A7  10864  solute carrier family 22 member 7
AliasesNLT; OAT2
GeneCards (Weizmann)SLC22A7
Ensembl hg19 (Hinxton)ENSG00000137204 [Gene_View]  chr6:43265998-43273276 [Contig_View]  SLC22A7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137204 [Gene_View]  chr6:43265998-43273276 [Contig_View]  SLC22A7 [Vega]
ICGC DataPortalENSG00000137204
TCGA cBioPortalSLC22A7
AceView (NCBI)SLC22A7
Genatlas (Paris)SLC22A7
WikiGenes10864
SOURCE (Princeton)SLC22A7
Genetics Home Reference (NIH)SLC22A7
Genomic and cartography
GoldenPath hg19 (UCSC)SLC22A7  -     chr6:43265998-43273276 +  6p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC22A7  -     6p21.1   [Description]    (hg38-Dec_2013)
EnsemblSLC22A7 - 6p21.1 [CytoView hg19]  SLC22A7 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBISLC22A7 [Mapview hg19]  SLC22A7 [Mapview hg38]
OMIM604995   
Gene and transcription
Genbank (Entrez)AA705161 AF097518 AF210455 AI928177 AK290796
RefSeq transcript (Entrez)NM_006672 NM_153320
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)SLC22A7
Cluster EST : UnigeneHs.485438 [ NCBI ]
CGAP (NCI)Hs.485438
Alternative Splicing GalleryENSG00000137204
Gene ExpressionSLC22A7 [ NCBI-GEO ]   SLC22A7 [ EBI - ARRAY_EXPRESS ]   SLC22A7 [ SEEK ]   SLC22A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10864
GTEX Portal (Tissue expression)SLC22A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y694   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y694  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y694
Splice isoforms : SwissVarQ9Y694
PhosPhoSitePlusQ9Y694
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Orgcat_transp/SVOP   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC22A7
DMDM Disease mutations10864
Blocks (Seattle)SLC22A7
SuperfamilyQ9Y694
Human Protein AtlasENSG00000137204
Peptide AtlasQ9Y694
HPRD05409
IPIIPI00010527   IPI00477953   IPI00644268   IPI00647053   IPI01014714   IPI00514534   IPI00642120   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y694
IntAct (EBI)Q9Y694
FunCoupENSG00000137204
BioGRIDSLC22A7
STRING (EMBL)SLC22A7
ZODIACSLC22A7
Ontologies - Pathways
QuickGOQ9Y694
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  anion:anion antiporter activity  sodium-independent organic anion transmembrane transporter activity  organic anion transport  membrane  basolateral plasma membrane  anion transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  anion:anion antiporter activity  sodium-independent organic anion transmembrane transporter activity  organic anion transport  membrane  basolateral plasma membrane  anion transmembrane transport  
Pathways : KEGGBile secretion   
NDEx NetworkSLC22A7
Atlas of Cancer Signalling NetworkSLC22A7
Wikipedia pathwaysSLC22A7
Orthology - Evolution
OrthoDB10864
GeneTree (enSembl)ENSG00000137204
Phylogenetic Trees/Animal Genes : TreeFamSLC22A7
HOVERGENQ9Y694
HOGENOMQ9Y694
Homologs : HomoloGeneSLC22A7
Homology/Alignments : Family Browser (UCSC)SLC22A7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A7
dbVarSLC22A7
ClinVarSLC22A7
1000_GenomesSLC22A7 
Exome Variant ServerSLC22A7
ExAC (Exome Aggregation Consortium)SLC22A7 (select the gene name)
Genetic variants : HAPMAP10864
Genomic Variants (DGV)SLC22A7 [DGVbeta]
DECIPHER (Syndromes)6:43265998-43273276  ENSG00000137204
CONAN: Copy Number AnalysisSLC22A7 
Mutations
ICGC Data PortalSLC22A7 
TCGA Data PortalSLC22A7 
Broad Tumor PortalSLC22A7
OASIS PortalSLC22A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A7
DgiDB (Drug Gene Interaction Database)SLC22A7
DoCM (Curated mutations)SLC22A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A7 (select a term)
intoGenSLC22A7
Cancer3DSLC22A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604995   
Orphanet
MedgenSLC22A7
Genetic Testing Registry SLC22A7
NextProtQ9Y694 [Medical]
TSGene10864
GENETestsSLC22A7
Huge Navigator SLC22A7 [HugePedia]
snp3D : Map Gene to Disease10864
BioCentury BCIQSLC22A7
ClinGenSLC22A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10864
Chemical/Pharm GKB GenePA35848
Clinical trialSLC22A7
Miscellaneous
canSAR (ICR)SLC22A7 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A7
EVEXSLC22A7
GoPubMedSLC22A7
iHOPSLC22A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:33 CEST 2017

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