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SLC22A9 (solute carrier family 22 member 9)

Identity

Alias_namessolute carrier family 22 (organic anion transporter), member 9
Alias_symbol (synonym)OAT4
FLJ23666
UST3
OAT7
Other aliasHOAT4
UST3H
ust3
HGNC (Hugo) SLC22A9
LocusID (NCBI) 114571
Atlas_Id 73326
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 63369789 and ends at 63410240 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC22A9   16261
Cards
Entrez_Gene (NCBI)SLC22A9  114571  solute carrier family 22 member 9
AliasesHOAT4; OAT4; OAT7; UST3H; 
ust3
GeneCards (Weizmann)SLC22A9
Ensembl hg19 (Hinxton)ENSG00000149742 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149742 [Gene_View]  chr11:63369789-63410240 [Contig_View]  SLC22A9 [Vega]
ICGC DataPortalENSG00000149742
TCGA cBioPortalSLC22A9
AceView (NCBI)SLC22A9
Genatlas (Paris)SLC22A9
WikiGenes114571
SOURCE (Princeton)SLC22A9
Genetics Home Reference (NIH)SLC22A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC22A9  -     chr11:63369789-63410240 +  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC22A9  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblSLC22A9 - 11q12.3 [CytoView hg19]  SLC22A9 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISLC22A9 [Mapview hg19]  SLC22A9 [Mapview hg38]
OMIM607579   
Gene and transcription
Genbank (Entrez)AB062418 AB074812 AF440402 AJ295270 AK074246
RefSeq transcript (Entrez)NM_080866
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC22A9
Cluster EST : UnigeneHs.502772 [ NCBI ]
CGAP (NCI)Hs.502772
Alternative Splicing GalleryENSG00000149742
Gene ExpressionSLC22A9 [ NCBI-GEO ]   SLC22A9 [ EBI - ARRAY_EXPRESS ]   SLC22A9 [ SEEK ]   SLC22A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC22A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114571
GTEX Portal (Tissue expression)SLC22A9
Human Protein AtlasENSG00000149742-SLC22A9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVM8
Splice isoforms : SwissVarQ8IVM8
PhosPhoSitePlusQ8IVM8
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC22A9
DMDM Disease mutations114571
Blocks (Seattle)SLC22A9
SuperfamilyQ8IVM8
Human Protein Atlas [tissue]ENSG00000149742-SLC22A9 [tissue]
Peptide AtlasQ8IVM8
HPRD06982
IPIIPI00217067   IPI00152340   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVM8
IntAct (EBI)Q8IVM8
FunCoupENSG00000149742
BioGRIDSLC22A9
STRING (EMBL)SLC22A9
ZODIACSLC22A9
Ontologies - Pathways
QuickGOQ8IVM8
Ontology : AmiGOinorganic anion exchanger activity  integral component of plasma membrane  hormone transport  urate transmembrane transporter activity  anion:anion antiporter activity  sodium-independent organic anion transmembrane transporter activity  short-chain fatty acid uptake transporter activity  inorganic anion transport  urate transport  short-chain fatty acid import  basolateral plasma membrane  sodium-independent organic anion transport  anion transmembrane transport  organic acid transmembrane transport  
Ontology : EGO-EBIinorganic anion exchanger activity  integral component of plasma membrane  hormone transport  urate transmembrane transporter activity  anion:anion antiporter activity  sodium-independent organic anion transmembrane transporter activity  short-chain fatty acid uptake transporter activity  inorganic anion transport  urate transport  short-chain fatty acid import  basolateral plasma membrane  sodium-independent organic anion transport  anion transmembrane transport  organic acid transmembrane transport  
NDEx NetworkSLC22A9
Atlas of Cancer Signalling NetworkSLC22A9
Wikipedia pathwaysSLC22A9
Orthology - Evolution
OrthoDB114571
GeneTree (enSembl)ENSG00000149742
Phylogenetic Trees/Animal Genes : TreeFamSLC22A9
HOVERGENQ8IVM8
HOGENOMQ8IVM8
Homologs : HomoloGeneSLC22A9
Homology/Alignments : Family Browser (UCSC)SLC22A9
Gene fusions - Rearrangements
Tumor Fusion PortalSLC22A9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC22A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC22A9
dbVarSLC22A9
ClinVarSLC22A9
1000_GenomesSLC22A9 
Exome Variant ServerSLC22A9
ExAC (Exome Aggregation Consortium)ENSG00000149742
GNOMAD BrowserENSG00000149742
Genetic variants : HAPMAP114571
Genomic Variants (DGV)SLC22A9 [DGVbeta]
DECIPHERSLC22A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC22A9 
Mutations
ICGC Data PortalSLC22A9 
TCGA Data PortalSLC22A9 
Broad Tumor PortalSLC22A9
OASIS PortalSLC22A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC22A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC22A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC22A9
DgiDB (Drug Gene Interaction Database)SLC22A9
DoCM (Curated mutations)SLC22A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC22A9 (select a term)
intoGenSLC22A9
Cancer3DSLC22A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607579   
Orphanet
DisGeNETSLC22A9
MedgenSLC22A9
Genetic Testing Registry SLC22A9
NextProtQ8IVM8 [Medical]
TSGene114571
GENETestsSLC22A9
Target ValidationSLC22A9
Huge Navigator SLC22A9 [HugePedia]
snp3D : Map Gene to Disease114571
BioCentury BCIQSLC22A9
ClinGenSLC22A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114571
Chemical/Pharm GKB GenePA38102
Clinical trialSLC22A9
Miscellaneous
canSAR (ICR)SLC22A9 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC22A9
EVEXSLC22A9
GoPubMedSLC22A9
iHOPSLC22A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:25:12 CET 2017

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