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SLC23A3 (solute carrier family 23 member 3)

Identity

Alias_namessolute carrier family 23, member 3
Alias_symbol (synonym)SVCT3
FLJ31168
Yspl1
Other aliasE2BP3
HGNC (Hugo) SLC23A3
LocusID (NCBI) 151295
Atlas_Id 73327
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 219161459 and ends at 219170095 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC23A3   20601
Cards
Entrez_Gene (NCBI)SLC23A3  151295  solute carrier family 23 member 3
AliasesE2BP3; SVCT3; Yspl1
GeneCards (Weizmann)SLC23A3
Ensembl hg19 (Hinxton)ENSG00000213901 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213901 [Gene_View]  chr2:219161459-219170095 [Contig_View]  SLC23A3 [Vega]
ICGC DataPortalENSG00000213901
TCGA cBioPortalSLC23A3
AceView (NCBI)SLC23A3
Genatlas (Paris)SLC23A3
WikiGenes151295
SOURCE (Princeton)SLC23A3
Genetics Home Reference (NIH)SLC23A3
Genomic and cartography
GoldenPath hg38 (UCSC)SLC23A3  -     chr2:219161459-219170095 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC23A3  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblSLC23A3 - 2q35 [CytoView hg19]  SLC23A3 - 2q35 [CytoView hg38]
Mapping of homologs : NCBISLC23A3 [Mapview hg19]  SLC23A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055730 AK298256 AK298277 BC030243 DC361649
RefSeq transcript (Entrez)NM_001144889 NM_001144890 NM_144712
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC23A3
Cluster EST : UnigeneHs.124565 [ NCBI ]
CGAP (NCI)Hs.124565
Alternative Splicing GalleryENSG00000213901
Gene ExpressionSLC23A3 [ NCBI-GEO ]   SLC23A3 [ EBI - ARRAY_EXPRESS ]   SLC23A3 [ SEEK ]   SLC23A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC23A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151295
GTEX Portal (Tissue expression)SLC23A3
Human Protein AtlasENSG00000213901-SLC23A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIS1
Splice isoforms : SwissVarQ6PIS1
PhosPhoSitePlusQ6PIS1
Domains : Interpro (EBI)Xant/urac/vitC   
Domain families : Pfam (Sanger)Xan_ur_permease (PF00860)   
Domain families : Pfam (NCBI)pfam00860   
Conserved Domain (NCBI)SLC23A3
DMDM Disease mutations151295
Blocks (Seattle)SLC23A3
SuperfamilyQ6PIS1
Human Protein Atlas [tissue]ENSG00000213901-SLC23A3 [tissue]
Peptide AtlasQ6PIS1
HPRD15350
IPIIPI00892774   IPI00555756   IPI00719478   IPI00743678   IPI00917330   IPI00917596   IPI00917999   IPI00917305   IPI00917725   IPI00917969   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIS1
IntAct (EBI)Q6PIS1
FunCoupENSG00000213901
BioGRIDSLC23A3
STRING (EMBL)SLC23A3
ZODIACSLC23A3
Ontologies - Pathways
QuickGOQ6PIS1
Ontology : AmiGOtransporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBItransporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkSLC23A3
Atlas of Cancer Signalling NetworkSLC23A3
Wikipedia pathwaysSLC23A3
Orthology - Evolution
OrthoDB151295
GeneTree (enSembl)ENSG00000213901
Phylogenetic Trees/Animal Genes : TreeFamSLC23A3
HOVERGENQ6PIS1
HOGENOMQ6PIS1
Homologs : HomoloGeneSLC23A3
Homology/Alignments : Family Browser (UCSC)SLC23A3
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC23A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC23A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC23A3
dbVarSLC23A3
ClinVarSLC23A3
1000_GenomesSLC23A3 
Exome Variant ServerSLC23A3
ExAC (Exome Aggregation Consortium)ENSG00000213901
GNOMAD BrowserENSG00000213901
Genetic variants : HAPMAP151295
Genomic Variants (DGV)SLC23A3 [DGVbeta]
DECIPHERSLC23A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC23A3 
Mutations
ICGC Data PortalSLC23A3 
TCGA Data PortalSLC23A3 
Broad Tumor PortalSLC23A3
OASIS PortalSLC23A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC23A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC23A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC23A3
DgiDB (Drug Gene Interaction Database)SLC23A3
DoCM (Curated mutations)SLC23A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC23A3 (select a term)
intoGenSLC23A3
Cancer3DSLC23A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC23A3
Genetic Testing Registry SLC23A3
NextProtQ6PIS1 [Medical]
TSGene151295
GENETestsSLC23A3
Target ValidationSLC23A3
Huge Navigator SLC23A3 [HugePedia]
snp3D : Map Gene to Disease151295
BioCentury BCIQSLC23A3
ClinGenSLC23A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151295
Chemical/Pharm GKB GenePA134932069
Clinical trialSLC23A3
Miscellaneous
canSAR (ICR)SLC23A3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC23A3
EVEXSLC23A3
GoPubMedSLC23A3
iHOPSLC23A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:27:21 CET 2017

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