Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC24A1 (solute carrier family 24 (sodium/potassium/calcium exchanger), member 1)

Identity

Alias_namessolute carrier family 24 (sodium/potassium/calcium exchanger), member 1
Alias_symbol (synonym)NCKX1
NCKX
RODX
KIAA0702
HsT17412
CSNB1D
Other alias
HGNC (Hugo) SLC24A1
LocusID (NCBI) 9187
Atlas_Id 73328
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65935243 and ends at 65948598 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC24A1   10975
Cards
Entrez_Gene (NCBI)SLC24A1  9187  solute carrier family 24 (sodium/potassium/calcium exchanger), member 1
AliasesCSNB1D; HsT17412; NCKX; NCKX1; 
RODX
GeneCards (Weizmann)SLC24A1
Ensembl hg19 (Hinxton)ENSG00000074621 [Gene_View]  chr15:65935243-65948598 [Contig_View]  SLC24A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000074621 [Gene_View]  chr15:65935243-65948598 [Contig_View]  SLC24A1 [Vega]
ICGC DataPortalENSG00000074621
TCGA cBioPortalSLC24A1
AceView (NCBI)SLC24A1
Genatlas (Paris)SLC24A1
WikiGenes9187
SOURCE (Princeton)SLC24A1
Genetics Home Reference (NIH)SLC24A1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC24A1  -     chr15:65935243-65948598 +  15q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC24A1  -     15q22.31   [Description]    (hg38-Dec_2013)
EnsemblSLC24A1 - 15q22.31 [CytoView hg19]  SLC24A1 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBISLC24A1 [Mapview hg19]  SLC24A1 [Mapview hg38]
OMIM603617   613830   
Gene and transcription
Genbank (Entrez)AB014602 AF026132 AF062921 AF062922 AI026072
RefSeq transcript (Entrez)NM_001254740 NM_001301031 NM_001301032 NM_001301033 NM_004727
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_031968 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)SLC24A1
Cluster EST : UnigeneHs.617821 [ NCBI ]
CGAP (NCI)Hs.617821
Alternative Splicing GalleryENSG00000074621
Gene ExpressionSLC24A1 [ NCBI-GEO ]   SLC24A1 [ EBI - ARRAY_EXPRESS ]   SLC24A1 [ SEEK ]   SLC24A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC24A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9187
GTEX Portal (Tissue expression)SLC24A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60721   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60721  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60721
Splice isoforms : SwissVarO60721
PhosPhoSitePlusO60721
Domains : Interpro (EBI)K/Na/Ca-exchanger    NaCa_Exmemb    SLC24A1   
Domain families : Pfam (Sanger)Na_Ca_ex (PF01699)   
Domain families : Pfam (NCBI)pfam01699   
Conserved Domain (NCBI)SLC24A1
DMDM Disease mutations9187
Blocks (Seattle)SLC24A1
SuperfamilyO60721
Human Protein AtlasENSG00000074621
Peptide AtlasO60721
HPRD04685
IPIIPI00006195   IPI00216460   IPI01010108   IPI01014767   IPI00783599   IPI01016042   
Protein Interaction databases
DIP (DOE-UCLA)O60721
IntAct (EBI)O60721
FunCoupENSG00000074621
BioGRIDSLC24A1
STRING (EMBL)SLC24A1
ZODIACSLC24A1
Ontologies - Pathways
QuickGOO60721
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  transport  ion transport  calcium ion transport  visual perception  phototransduction, visible light  calcium, potassium:sodium antiporter activity  response to light intensity  symporter activity  membrane  rhodopsin mediated signaling pathway  outer membrane  sodium ion transmembrane transport  sodium ion transmembrane transport  transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  transport  ion transport  calcium ion transport  visual perception  phototransduction, visible light  calcium, potassium:sodium antiporter activity  response to light intensity  symporter activity  membrane  rhodopsin mediated signaling pathway  outer membrane  sodium ion transmembrane transport  sodium ion transmembrane transport  transmembrane transport  
Pathways : KEGGPhototransduction   
NDEx NetworkSLC24A1
Atlas of Cancer Signalling NetworkSLC24A1
Wikipedia pathwaysSLC24A1
Orthology - Evolution
OrthoDB9187
GeneTree (enSembl)ENSG00000074621
Phylogenetic Trees/Animal Genes : TreeFamSLC24A1
HOVERGENO60721
HOGENOMO60721
Homologs : HomoloGeneSLC24A1
Homology/Alignments : Family Browser (UCSC)SLC24A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC24A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC24A1
dbVarSLC24A1
ClinVarSLC24A1
1000_GenomesSLC24A1 
Exome Variant ServerSLC24A1
ExAC (Exome Aggregation Consortium)SLC24A1 (select the gene name)
Genetic variants : HAPMAP9187
Genomic Variants (DGV)SLC24A1 [DGVbeta]
DECIPHER (Syndromes)15:65935243-65948598  ENSG00000074621
CONAN: Copy Number AnalysisSLC24A1 
Mutations
ICGC Data PortalSLC24A1 
TCGA Data PortalSLC24A1 
Broad Tumor PortalSLC24A1
OASIS PortalSLC24A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC24A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC24A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch SLC24A1
DgiDB (Drug Gene Interaction Database)SLC24A1
DoCM (Curated mutations)SLC24A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC24A1 (select a term)
intoGenSLC24A1
Cancer3DSLC24A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603617    613830   
Orphanet923   
MedgenSLC24A1
Genetic Testing Registry SLC24A1
NextProtO60721 [Medical]
TSGene9187
GENETestsSLC24A1
Huge Navigator SLC24A1 [HugePedia]
snp3D : Map Gene to Disease9187
BioCentury BCIQSLC24A1
ClinGenSLC24A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9187
Chemical/Pharm GKB GenePA35851
Clinical trialSLC24A1
Miscellaneous
canSAR (ICR)SLC24A1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC24A1
EVEXSLC24A1
GoPubMedSLC24A1
iHOPSLC24A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:26 CET 2017

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