Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC25A10 (solute carrier family 25 member 10)

Identity

Alias_namesDIC
solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10
Other alias
HGNC (Hugo) SLC25A10
LocusID (NCBI) 1468
Atlas_Id 73334
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81712236 and ends at 81721016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EEF2 (19p13.3) / SLC25A10 (17q25.3)SLC25A10 (17q25.3) / HGS (17q25.3)SLC25A10 (17q25.3) / USP32 (17q23.1)
SLC25A10 USP32SLC25A10 HGS

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A10&.bsp;nbrp; 10980
Cards
Entrez_Gene (NCBI)SLC25A10  1468  solute carrier family 25 member 10
AliasesDIC
GeneCards (Weizmann)SLC25A10
Ensembl hg19 (Hinxton)ENSG00000183048 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183048 [Gene_View]  chr17:81712236-81721016 [Contig_View]  SLC25A10 [Vega]
ICGC DataPortalENSG00000183048
TCGA cBioPortalSLC25A10
AceView (NCBI)SLC25A10
Genatlas (Paris)SLC25A10
WikiGenes1468
SOURCE (Princeton)SLC25A10
Genetics Home Reference (NIH)SLC25A10
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A10  -     chr17:81712236-81721016 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A10  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblSLC25A10 - 17q25.3 [CytoView hg19]  SLC25A10 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBISLC25A10 [Mapview hg19]  SLC25A10 [Mapview hg38]
OMIM606794   
Gene and transcription
Genbank (Entrez)AI081980 AJ131613 AK075249 AK303808 BC007355
RefSeq transcript (Entrez)NM_001270888 NM_001270953 NM_012140
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A10
Cluster EST : UnigeneHs.548187 [ NCBI ]
CGAP (NCI)Hs.548187
Alternative Splicing GalleryENSG00000183048
Gene ExpressionSLC25A10 [ NCBI-GEO ]   SLC25A10 [ EBI - ARRAY_EXPRESS ]   SLC25A10 [ SEEK ]   SLC25A10 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1468
GTEX Portal (Tissue expression)SLC25A10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBX3
Splice isoforms : SwissVarQ9UBX3
PhosPhoSitePlusQ9UBX3
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_uncoupling    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A10
DMDM Disease mutations1468
Blocks (Seattle)SLC25A10
SuperfamilyQ9UBX3
Human Protein AtlasENSG00000183048
Peptide AtlasQ9UBX3
HPRD08424
IPIIPI00015920   IPI00217277   IPI00005537   IPI01009526   IPI00386010   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBX3
IntAct (EBI)Q9UBX3
FunCoupENSG00000183048
BioGRIDSLC25A10
STRING (EMBL)SLC25A10
ZODIACSLC25A10
Ontologies - Pathways
QuickGOQ9UBX3
Ontology : AmiGOdicarboxylic acid transmembrane transporter activity  protein binding  nucleus  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  gluconeogenesis  ion transport  dicarboxylic acid transport  mitochondrial transport  sulfate transport  sulfate transmembrane transporter activity  thiosulfate transmembrane transporter activity  oxaloacetate transmembrane transporter activity  malate transmembrane transporter activity  succinate transmembrane transporter activity  antiporter activity  thiosulfate transport  oxaloacetate transport  integral component of membrane  phosphate ion transmembrane transport  sulfide oxidation, using sulfide:quinone oxidoreductase  succinate transmembrane transport  malate transmembrane transport  phosphate transmembrane transporter activity  oxaloacetate(2-) transmembrane transport  sulfate transmembrane transport  
Ontology : EGO-EBIdicarboxylic acid transmembrane transporter activity  protein binding  nucleus  nucleoplasm  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  gluconeogenesis  ion transport  dicarboxylic acid transport  mitochondrial transport  sulfate transport  sulfate transmembrane transporter activity  thiosulfate transmembrane transporter activity  oxaloacetate transmembrane transporter activity  malate transmembrane transporter activity  succinate transmembrane transporter activity  antiporter activity  thiosulfate transport  oxaloacetate transport  integral component of membrane  phosphate ion transmembrane transport  sulfide oxidation, using sulfide:quinone oxidoreductase  succinate transmembrane transport  malate transmembrane transport  phosphate transmembrane transporter activity  oxaloacetate(2-) transmembrane transport  sulfate transmembrane transport  
Pathways : KEGGProximal tubule bicarbonate reclamation   
NDEx NetworkSLC25A10
Atlas of Cancer Signalling NetworkSLC25A10
Wikipedia pathwaysSLC25A10
Orthology - Evolution
OrthoDB1468
GeneTree (enSembl)ENSG00000183048
Phylogenetic Trees/Animal Genes : TreeFamSLC25A10
HOVERGENQ9UBX3
HOGENOMQ9UBX3
Homologs : HomoloGeneSLC25A10
Homology/Alignments : Family Browser (UCSC)SLC25A10
Gene fusions - Rearrangements
Fusion: TCGASLC25A10 USP32
Fusion: TCGASLC25A10 HGS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A10
dbVarSLC25A10
ClinVarSLC25A10
1000_GenomesSLC25A10 
Exome Variant ServerSLC25A10
ExAC (Exome Aggregation Consortium)SLC25A10 (select the gene name)
Genetic variants : HAPMAP1468
Genomic Variants (DGV)SLC25A10 [DGVbeta]
DECIPHERSLC25A10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A10 
Mutations
ICGC Data PortalSLC25A10 
TCGA Data PortalSLC25A10 
Broad Tumor PortalSLC25A10
OASIS PortalSLC25A10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A10
DgiDB (Drug Gene Interaction Database)SLC25A10
DoCM (Curated mutations)SLC25A10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A10 (select a term)
intoGenSLC25A10
Cancer3DSLC25A10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606794   
Orphanet
MedgenSLC25A10
Genetic Testing Registry SLC25A10
NextProtQ9UBX3 [Medical]
TSGene1468
GENETestsSLC25A10
Target ValidationSLC25A10
Huge Navigator SLC25A10 [HugePedia]
snp3D : Map Gene to Disease1468
BioCentury BCIQSLC25A10
ClinGenSLC25A10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1468
Chemical/Pharm GKB GenePA35856
Clinical trialSLC25A10
Miscellaneous
canSAR (ICR)SLC25A10 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A10
EVEXSLC25A10
GoPubMedSLC25A10
iHOPSLC25A10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.