Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A13 (solute carrier family 25 (aspartate/glutamate carrier), member 13)

Identity

Other namesARALAR2
CITRIN
CTLN2
HGNC (Hugo) SLC25A13
LocusID (NCBI) 10165
Location 7q21.3
Location_base_pair Starts at 95749532 and ends at 95951459 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SLC25A13   10983
Cards
Entrez_Gene (NCBI)SLC25A13  10165  solute carrier family 25 (aspartate/glutamate carrier), member 13
GeneCards (Weizmann)SLC25A13
Ensembl (Hinxton)ENSG00000004864 [Gene_View]  chr7:95749532-95951459 [Contig_View]  SLC25A13 [Vega]
ICGC DataPortalENSG00000004864
cBioPortalSLC25A13
AceView (NCBI)SLC25A13
Genatlas (Paris)SLC25A13
WikiGenes10165
SOURCE (Princeton)NM_001160210 NM_014251
Genomic and cartography
GoldenPath (UCSC)SLC25A13  -  7q21.3   chr7:95749532-95951459 -  7q21.3   [Description]    (hg19-Feb_2009)
EnsemblSLC25A13 - 7q21.3 [CytoView]
Mapping of homologs : NCBISLC25A13 [Mapview]
OMIM603471   603859   605814   
Gene and transcription
Genbank (Entrez)AF118838 AJ496569 AK000766 AK025227 AK025779
RefSeq transcript (Entrez)NM_001160210 NM_014251
RefSeq genomic (Entrez)AC_000139 NC_000007 NC_018918 NG_012247 NT_007933 NW_001839064 NW_004929332
Consensus coding sequences : CCDS (NCBI)SLC25A13
Cluster EST : UnigeneHs.489190 [ NCBI ]
CGAP (NCI)Hs.489190
Alternative Splicing : Fast-db (Paris)GSHG0028367
Alternative Splicing GalleryENSG00000004864
Gene ExpressionSLC25A13 [ NCBI-GEO ]     SLC25A13 [ SEEK ]   SLC25A13 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJS0 (Uniprot)
NextProtQ9UJS0  [Medical]
With graphics : InterProQ9UJS0
Splice isoforms : SwissVarQ9UJS0 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)    SOLCAR (PS50920)   
Domains : Interpro (EBI)EF-hand-dom_pair [organisation]   EF_hand_dom [organisation]   Mit_carrier [organisation]   Mitochondrial_sb/sol_carrier [organisation]   Mt_carrier_dom [organisation]  
Related proteins : CluSTrQ9UJS0
Domain families : Pfam (Sanger)EF-hand_6 (PF13405)    Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam13405    pfam00153   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations10165
Blocks (Seattle)Q9UJS0
Human Protein AtlasENSG00000004864 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9UJS0
HPRD04837
IPIIPI00007084   IPI01012502   IPI00930710   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJS0
IntAct (EBI)Q9UJS0
FunCoupENSG00000004864
BioGRIDSLC25A13
InParanoidQ9UJS0
Interologous Interaction database Q9UJS0
IntegromeDBSLC25A13
STRING (EMBL)SLC25A13
Ontologies - Pathways
Ontology : AmiGOtransporter activity  L-glutamate transmembrane transporter activity  calcium ion binding  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  integral component of plasma membrane  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  ATP biosynthetic process  transport  L-aspartate transmembrane transporter activity  aspartate transport  L-glutamate transport  malate-aspartate shuttle  small molecule metabolic process  cellular respiration  response to calcium ion  transmembrane transport  
Ontology : EGO-EBItransporter activity  L-glutamate transmembrane transporter activity  calcium ion binding  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  integral component of plasma membrane  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  ATP biosynthetic process  transport  L-aspartate transmembrane transporter activity  aspartate transport  L-glutamate transport  malate-aspartate shuttle  small molecule metabolic process  cellular respiration  response to calcium ion  transmembrane transport  
Protein Interaction DatabaseSLC25A13
Wikipedia pathwaysSLC25A13
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC25A13
snp3D : Map Gene to Disease10165
SNP (GeneSNP Utah)SLC25A13
SNP : HGBaseSLC25A13
Genetic variants : HAPMAPSLC25A13
Exome VariantSLC25A13
1000_GenomesSLC25A13 
ICGC programENSG00000004864 
Somatic Mutations in Cancer : COSMICSLC25A13 
CONAN: Copy Number AnalysisSLC25A13 
Mutations and Diseases : HGMDSLC25A13
Mutations and Diseases : intOGenSLC25A13
Genomic VariantsSLC25A13  SLC25A13 [DGVbeta]
dbVarSLC25A13
ClinVarSLC25A13
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603471    603859    605814   
MedgenSLC25A13
GENETestsSLC25A13
Disease Genetic AssociationSLC25A13
Huge Navigator SLC25A13 [HugePedia]  SLC25A13 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneSLC25A13
Homology/Alignments : Family Browser (UCSC)SLC25A13
Phylogenetic Trees/Animal Genes : TreeFamSLC25A13
Chemical/Protein Interactions : CTD10165
Chemical/Pharm GKB GenePA35859
Clinical trialSLC25A13
Cancer Resource (Charite)ENSG00000004864
Other databases
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
CoreMineSLC25A13
iHOPSLC25A13
OncoSearchSLC25A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:18:28 CEST 2014

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