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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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SLC25A13 (solute carrier family 25 (aspartate/glutamate carrier), member 13)

Identity

Other namesARALAR2
CITRIN
CTLN2
HGNC (Hugo) SLC25A13
LocusID (NCBI) 10165
Location 7q21.3
Location_base_pair Starts at 95749532 and ends at 95951459 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SLC25A13   10983
Cards
Entrez_Gene (NCBI)SLC25A13  10165  solute carrier family 25 (aspartate/glutamate carrier), member 13
GeneCards (Weizmann)SLC25A13
Ensembl hg19 (Hinxton)ENSG00000004864 [Gene_View]  chr7:95749532-95951459 [Contig_View]  SLC25A13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000004864 [Gene_View]  chr7:95749532-95951459 [Contig_View]  SLC25A13 [Vega]
ICGC DataPortalENSG00000004864
cBioPortalSLC25A13
AceView (NCBI)SLC25A13
Genatlas (Paris)SLC25A13
WikiGenes10165
SOURCE (Princeton)SLC25A13
Genomic and cartography
GoldenPath hg19 (UCSC)SLC25A13  -     chr7:95749532-95951459 -  7q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC25A13  -     7q21.3   [Description]    (hg38-Dec_2013)
EnsemblSLC25A13 - 7q21.3 [CytoView hg19]  SLC25A13 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBISLC25A13 [Mapview hg19]  SLC25A13 [Mapview hg38]
OMIM603471   603859   605814   
Gene and transcription
Genbank (Entrez)AF118838 AJ496569 AK000766 AK025227 AK025779
RefSeq transcript (Entrez)NM_001160210 NM_014251
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_012247 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SLC25A13
Cluster EST : UnigeneHs.489190 [ NCBI ]
CGAP (NCI)Hs.489190
Alternative Splicing : Fast-db (Paris)GSHG0028367
Alternative Splicing GalleryENSG00000004864
Gene ExpressionSLC25A13 [ NCBI-GEO ]     SLC25A13 [ SEEK ]   SLC25A13 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJS0 (Uniprot)
NextProtQ9UJS0  [Medical]
With graphics : InterProQ9UJS0
Splice isoforms : SwissVarQ9UJS0 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)    SOLCAR (PS50920)   
Domains : Interpro (EBI)Aralar2    EF-hand-dom_pair    EF_hand_dom    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Related proteins : CluSTrQ9UJS0
Domain families : Pfam (Sanger)EF-hand_6 (PF13405)    Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam13405    pfam00153   
Domain families : Smart (EMBL)EFh (SM00054)  
DMDM Disease mutations10165
Blocks (Seattle)Q9UJS0
PDB (SRS)4P5W   
PDB (PDBSum)4P5W   
PDB (IMB)4P5W   
PDB (RSDB)4P5W   
Human Protein AtlasENSG00000004864
Peptide AtlasQ9UJS0
HPRD04837
IPIIPI00007084   IPI01012502   IPI00930710   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJS0
IntAct (EBI)Q9UJS0
FunCoupENSG00000004864
BioGRIDSLC25A13
IntegromeDBSLC25A13
STRING (EMBL)SLC25A13
Ontologies - Pathways
QuickGOQ9UJS0
Ontology : AmiGOtransporter activity  L-glutamate transmembrane transporter activity  calcium ion binding  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  integral component of plasma membrane  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  ATP biosynthetic process  transport  pathogenesis  L-aspartate transmembrane transporter activity  aspartate transport  L-glutamate transport  malate-aspartate shuttle  small molecule metabolic process  cellular respiration  response to calcium ion  L-glutamate transmembrane transport  L-glutamate transmembrane transport  L-aspartate transmembrane transport  L-aspartate transmembrane transport  
Ontology : EGO-EBItransporter activity  L-glutamate transmembrane transporter activity  calcium ion binding  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  integral component of plasma membrane  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  ATP biosynthetic process  transport  pathogenesis  L-aspartate transmembrane transporter activity  aspartate transport  L-glutamate transport  malate-aspartate shuttle  small molecule metabolic process  cellular respiration  response to calcium ion  L-glutamate transmembrane transport  L-glutamate transmembrane transport  L-aspartate transmembrane transport  L-aspartate transmembrane transport  
Protein Interaction DatabaseSLC25A13
DoCM (Curated mutations)SLC25A13
Wikipedia pathwaysSLC25A13
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSLC25A13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A13
dbVarSLC25A13
ClinVarSLC25A13
1000_GenomesSLC25A13 
Exome Variant ServerSLC25A13
SNP (GeneSNP Utah)SLC25A13
SNP : HGBaseSLC25A13
Genetic variants : HAPMAPSLC25A13
Genomic Variants (DGV)SLC25A13 [DGVbeta]
Mutations
ICGC Data PortalENSG00000004864 
Somatic Mutations in Cancer : COSMICSLC25A13 
CONAN: Copy Number AnalysisSLC25A13 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:95749532-95951459
Mutations and Diseases : HGMDSLC25A13
OMIM603471    603859    605814   
MedgenSLC25A13
NextProtQ9UJS0 [Medical]
GENETestsSLC25A13
Disease Genetic AssociationSLC25A13
Huge Navigator SLC25A13 [HugePedia]  SLC25A13 [HugeCancerGEM]
snp3D : Map Gene to Disease10165
DGIdb (Drug Gene Interaction db)SLC25A13
General knowledge
Homologs : HomoloGeneSLC25A13
Homology/Alignments : Family Browser (UCSC)SLC25A13
Phylogenetic Trees/Animal Genes : TreeFamSLC25A13
Chemical/Protein Interactions : CTD10165
Chemical/Pharm GKB GenePA35859
Clinical trialSLC25A13
Cancer Resource (Charite)ENSG00000004864
Other databases
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
CoreMineSLC25A13
GoPubMedSLC25A13
iHOPSLC25A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 17:19:08 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.