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SLC25A15 (solute carrier family 25 member 15)

Identity

Alias_namesORNT1
HHH
solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15
Alias_symbol (synonym)ORC1
D13S327
Other alias
HGNC (Hugo) SLC25A15
LocusID (NCBI) 10166
Atlas_Id 73338
Location 13q14.11  [Link to chromosome band 13q14]
Location_base_pair Starts at 40789411 and ends at 40812460 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CACNA1E (1q25.3) / SLC25A15 (13q14.11)SLC25A15 (13q14.11) / COL1A1 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A15   10985
Cards
Entrez_Gene (NCBI)SLC25A15  10166  solute carrier family 25 member 15
AliasesD13S327; HHH; ORC1; ORNT1
GeneCards (Weizmann)SLC25A15
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:40789411-40812460 [Contig_View]  SLC25A15 [Vega]
TCGA cBioPortalSLC25A15
AceView (NCBI)SLC25A15
Genatlas (Paris)SLC25A15
WikiGenes10166
SOURCE (Princeton)SLC25A15
Genetics Home Reference (NIH)SLC25A15
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A15  -     chr13:40789411-40812460 +  13q14.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A15  -     13q14.11   [Description]    (hg19-Feb_2009)
EnsemblSLC25A15 - 13q14.11 [CytoView hg19]  SLC25A15 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBISLC25A15 [Mapview hg19]  SLC25A15 [Mapview hg38]
OMIM238970   603861   
Gene and transcription
Genbank (Entrez)AA948095 AF112968 AF177333 AK296862 AK313602
RefSeq transcript (Entrez)NM_014252
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A15
Cluster EST : UnigeneHs.646645 [ NCBI ]
CGAP (NCI)Hs.646645
Gene ExpressionSLC25A15 [ NCBI-GEO ]   SLC25A15 [ EBI - ARRAY_EXPRESS ]   SLC25A15 [ SEEK ]   SLC25A15 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10166
GTEX Portal (Tissue expression)SLC25A15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y619   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y619  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y619
Splice isoforms : SwissVarQ9Y619
PhosPhoSitePlusQ9Y619
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A15
DMDM Disease mutations10166
Blocks (Seattle)SLC25A15
SuperfamilyQ9Y619
Peptide AtlasQ9Y619
HPRD04838
IPIIPI00003389   IPI00908629   IPI00640352   IPI00985397   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y619
IntAct (EBI)Q9Y619
BioGRIDSLC25A15
STRING (EMBL)SLC25A15
ZODIACSLC25A15
Ontologies - Pathways
QuickGOQ9Y619
Ontology : AmiGOurea cycle  L-ornithine transmembrane transporter activity  L-ornithine transmembrane transporter activity  mitochondrial ornithine transport  mitochondrial inner membrane  mitochondrial inner membrane  integral component of membrane  L-ornithine transmembrane transport  
Ontology : EGO-EBIurea cycle  L-ornithine transmembrane transporter activity  L-ornithine transmembrane transporter activity  mitochondrial ornithine transport  mitochondrial inner membrane  mitochondrial inner membrane  integral component of membrane  L-ornithine transmembrane transport  
NDEx NetworkSLC25A15
Atlas of Cancer Signalling NetworkSLC25A15
Wikipedia pathwaysSLC25A15
Orthology - Evolution
OrthoDB10166
Phylogenetic Trees/Animal Genes : TreeFamSLC25A15
HOVERGENQ9Y619
HOGENOMQ9Y619
Homologs : HomoloGeneSLC25A15
Homology/Alignments : Family Browser (UCSC)SLC25A15
Gene fusions - Rearrangements
Tumor Fusion PortalSLC25A15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A15
dbVarSLC25A15
ClinVarSLC25A15
1000_GenomesSLC25A15 
Exome Variant ServerSLC25A15
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP10166
Genomic Variants (DGV)SLC25A15 [DGVbeta]
DECIPHERSLC25A15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A15 
Mutations
ICGC Data PortalSLC25A15 
TCGA Data PortalSLC25A15 
Broad Tumor PortalSLC25A15
OASIS PortalSLC25A15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A15
DgiDB (Drug Gene Interaction Database)SLC25A15
DoCM (Curated mutations)SLC25A15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A15 (select a term)
intoGenSLC25A15
Cancer3DSLC25A15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM238970    603861   
Orphanet770   
DisGeNETSLC25A15
MedgenSLC25A15
Genetic Testing Registry SLC25A15
NextProtQ9Y619 [Medical]
TSGene10166
GENETestsSLC25A15
Target ValidationSLC25A15
Huge Navigator SLC25A15 [HugePedia]
snp3D : Map Gene to Disease10166
BioCentury BCIQSLC25A15
ClinGenSLC25A15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10166
Chemical/Pharm GKB GenePA35861
Clinical trialSLC25A15
Miscellaneous
canSAR (ICR)SLC25A15 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A15
EVEXSLC25A15
GoPubMedSLC25A15
iHOPSLC25A15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:12:20 CET 2017

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