Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC25A16 (solute carrier family 25 member 16)

Identity

Alias (NCBI)D10S105E
GDA
GDC
HGT.1
ML7
hML7
HGNC (Hugo) SLC25A16
HGNC Alias symbGDA
D10S105E
HGT.1
ML7
HGNC Alias nameGraves disease autoantigen
HGNC Previous namesolute carrier family 25 (mitochondrial carrier), member 16
LocusID (NCBI) 8034
Atlas_Id 73339
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 68477998 and ends at 68527523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJB12 (10q22.1) / SLC25A16 (10q21.3)SLC25A16 (10q21.3) / DNA2 (10q21.3)SLC25A16 (10q21.3) / ZFAND3 (6p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC25A16   10986
Cards
Entrez_Gene (NCBI)SLC25A16    solute carrier family 25 member 16
AliasesD10S105E; GDA; GDC; HGT.1; 
ML7; hML7
GeneCards (Weizmann)SLC25A16
Ensembl hg19 (Hinxton)ENSG00000122912 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122912 [Gene_View]  ENSG00000122912 [Sequence]  chr10:68477998-68527523 [Contig_View]  SLC25A16 [Vega]
ICGC DataPortalENSG00000122912
TCGA cBioPortalSLC25A16
AceView (NCBI)SLC25A16
Genatlas (Paris)SLC25A16
SOURCE (Princeton)SLC25A16
Genetics Home Reference (NIH)SLC25A16
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A16  -     chr10:68477998-68527523 -  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A16  -     10q21.3   [Description]    (hg19-Feb_2009)
GoldenPathSLC25A16 - 10q21.3 [CytoView hg19]  SLC25A16 - 10q21.3 [CytoView hg38]
ImmunoBaseENSG00000122912
Genome Data Viewer NCBISLC25A16 [Mapview hg19]  
OMIM139080   
Gene and transcription
Genbank (Entrez)AK123772 AK290255 AK295287 AK298510 BC001407
RefSeq transcript (Entrez)NM_001324312 NM_001324313 NM_001324314 NM_001324315 NM_001324317 NM_152707
Consensus coding sequences : CCDS (NCBI)SLC25A16
Gene ExpressionSLC25A16 [ NCBI-GEO ]   SLC25A16 [ EBI - ARRAY_EXPRESS ]   SLC25A16 [ SEEK ]   SLC25A16 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A16 [ Firebrowse - Broad ]
GenevisibleExpression of SLC25A16 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8034
GTEX Portal (Tissue expression)SLC25A16
Human Protein AtlasENSG00000122912-SLC25A16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16260   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16260  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16260
PhosPhoSitePlusP16260
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Graves_DC    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom_sf   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A16
SuperfamilyP16260
AlphaFold pdb e-kbP16260   
Human Protein Atlas [tissue]ENSG00000122912-SLC25A16 [tissue]
HPRD00740
Protein Interaction databases
DIP (DOE-UCLA)P16260
IntAct (EBI)P16260
BioGRIDSLC25A16
STRING (EMBL)SLC25A16
ZODIACSLC25A16
Ontologies - Pathways
QuickGOP16260
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  mitochondrial transport  antiporter activity  coenzyme A biosynthetic process  integral component of membrane  transmembrane transport  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  mitochondrial transport  antiporter activity  coenzyme A biosynthetic process  integral component of membrane  transmembrane transport  
NDEx NetworkSLC25A16
Atlas of Cancer Signalling NetworkSLC25A16
Wikipedia pathwaysSLC25A16
Orthology - Evolution
OrthoDB8034
GeneTree (enSembl)ENSG00000122912
Phylogenetic Trees/Animal Genes : TreeFamSLC25A16
Homologs : HomoloGeneSLC25A16
Homology/Alignments : Family Browser (UCSC)SLC25A16
Gene fusions - Rearrangements
Fusion : QuiverSLC25A16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A16
dbVarSLC25A16
ClinVarSLC25A16
MonarchSLC25A16
1000_GenomesSLC25A16 
Exome Variant ServerSLC25A16
GNOMAD BrowserENSG00000122912
Varsome BrowserSLC25A16
ACMGSLC25A16 variants
VarityP16260
Genomic Variants (DGV)SLC25A16 [DGVbeta]
DECIPHERSLC25A16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A16 
Mutations
ICGC Data PortalSLC25A16 
TCGA Data PortalSLC25A16 
Broad Tumor PortalSLC25A16
OASIS PortalSLC25A16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A16  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC25A16
Mutations and Diseases : HGMDSLC25A16
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC25A16
DgiDB (Drug Gene Interaction Database)SLC25A16
DoCM (Curated mutations)SLC25A16
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A16
Cancer3DSLC25A16
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM139080   
Orphanet
DisGeNETSLC25A16
MedgenSLC25A16
Genetic Testing Registry SLC25A16
NextProtP16260 [Medical]
GENETestsSLC25A16
Target ValidationSLC25A16
Huge Navigator SLC25A16 [HugePedia]
ClinGenSLC25A16
Clinical trials, drugs, therapy
MyCancerGenomeSLC25A16
Protein Interactions : CTDSLC25A16
Pharm GKB GenePA35862
PharosP16260
Clinical trialSLC25A16
Miscellaneous
canSAR (ICR)SLC25A16
HarmonizomeSLC25A16
DataMed IndexSLC25A16
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC25A16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:20:49 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.