Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A16 (solute carrier family 25 member 16)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier), member 16
Alias_symbol (synonym)GDA
D10S105E
HGT.1
ML7
Other aliasGDC
hML7
HGNC (Hugo) SLC25A16
LocusID (NCBI) 8034
Atlas_Id 73339
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 68482333 and ends at 68527523 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DNAJB12 (10q22.1) / SLC25A16 (10q21.3)SLC25A16 (10q21.3) / DNA2 (10q21.3)SLC25A16 (10q21.3) / ZFAND3 (6p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A16   10986
Cards
Entrez_Gene (NCBI)SLC25A16  8034  solute carrier family 25 member 16
AliasesD10S105E; GDA; GDC; HGT.1; 
ML7; hML7
GeneCards (Weizmann)SLC25A16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:68482333-68527523 [Contig_View]  SLC25A16 [Vega]
TCGA cBioPortalSLC25A16
AceView (NCBI)SLC25A16
Genatlas (Paris)SLC25A16
WikiGenes8034
SOURCE (Princeton)SLC25A16
Genetics Home Reference (NIH)SLC25A16
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A16  -     chr10:68482333-68527523 -  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A16  -     10q21.3   [Description]    (hg19-Feb_2009)
EnsemblSLC25A16 - 10q21.3 [CytoView hg19]  SLC25A16 - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBISLC25A16 [Mapview hg19]  SLC25A16 [Mapview hg38]
OMIM139080   
Gene and transcription
Genbank (Entrez)AK123772 AK290255 AK295287 AK298510 BC001407
RefSeq transcript (Entrez)NM_001324312 NM_001324313 NM_001324314 NM_001324315 NM_001324317 NM_152707
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A16
Cluster EST : UnigeneHs.180408 [ NCBI ]
CGAP (NCI)Hs.180408
Gene ExpressionSLC25A16 [ NCBI-GEO ]   SLC25A16 [ EBI - ARRAY_EXPRESS ]   SLC25A16 [ SEEK ]   SLC25A16 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8034
GTEX Portal (Tissue expression)SLC25A16
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16260   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16260  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16260
Splice isoforms : SwissVarP16260
PhosPhoSitePlusP16260
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Graves_DC    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A16
DMDM Disease mutations8034
Blocks (Seattle)SLC25A16
SuperfamilyP16260
Peptide AtlasP16260
HPRD00740
IPIIPI00027763   IPI01015866   
Protein Interaction databases
DIP (DOE-UCLA)P16260
IntAct (EBI)P16260
BioGRIDSLC25A16
STRING (EMBL)SLC25A16
ZODIACSLC25A16
Ontologies - Pathways
QuickGOP16260
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  transport  mitochondrial transport  coenzyme biosynthetic process  secondary active transmembrane transporter activity  antiporter activity  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  transport  mitochondrial transport  coenzyme biosynthetic process  secondary active transmembrane transporter activity  antiporter activity  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC25A16
Atlas of Cancer Signalling NetworkSLC25A16
Wikipedia pathwaysSLC25A16
Orthology - Evolution
OrthoDB8034
Phylogenetic Trees/Animal Genes : TreeFamSLC25A16
HOVERGENP16260
HOGENOMP16260
Homologs : HomoloGeneSLC25A16
Homology/Alignments : Family Browser (UCSC)SLC25A16
Gene fusions - Rearrangements
Tumor Fusion PortalSLC25A16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A16
dbVarSLC25A16
ClinVarSLC25A16
1000_GenomesSLC25A16 
Exome Variant ServerSLC25A16
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP8034
Genomic Variants (DGV)SLC25A16 [DGVbeta]
DECIPHERSLC25A16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A16 
Mutations
ICGC Data PortalSLC25A16 
TCGA Data PortalSLC25A16 
Broad Tumor PortalSLC25A16
OASIS PortalSLC25A16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A16
DgiDB (Drug Gene Interaction Database)SLC25A16
DoCM (Curated mutations)SLC25A16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A16 (select a term)
intoGenSLC25A16
Cancer3DSLC25A16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM139080   
Orphanet
DisGeNETSLC25A16
MedgenSLC25A16
Genetic Testing Registry SLC25A16
NextProtP16260 [Medical]
TSGene8034
GENETestsSLC25A16
Target ValidationSLC25A16
Huge Navigator SLC25A16 [HugePedia]
snp3D : Map Gene to Disease8034
BioCentury BCIQSLC25A16
ClinGenSLC25A16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8034
Chemical/Pharm GKB GenePA35862
Clinical trialSLC25A16
Miscellaneous
canSAR (ICR)SLC25A16 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A16
EVEXSLC25A16
GoPubMedSLC25A16
iHOPSLC25A16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:22:34 CET 2017

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