Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A17 (solute carrier family 25 member 17)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kD), member 17
solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17
Alias_symbol (synonym)PMP34
Other alias
HGNC (Hugo) SLC25A17
LocusID (NCBI) 10478
Atlas_Id 73340
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 40769630 and ends at 40819399 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MKL1 (22q13.1) / SLC25A17 (22q13.2)SLC25A17 (22q13.2) / EPN3 (17q21.33)SLC25A17 (22q13.2) / RBFOX2 (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A17   10987
Cards
Entrez_Gene (NCBI)SLC25A17  10478  solute carrier family 25 member 17
AliasesPMP34
GeneCards (Weizmann)SLC25A17
Ensembl hg19 (Hinxton)ENSG00000100372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100372 [Gene_View]  chr22:40769630-40819399 [Contig_View]  SLC25A17 [Vega]
ICGC DataPortalENSG00000100372
TCGA cBioPortalSLC25A17
AceView (NCBI)SLC25A17
Genatlas (Paris)SLC25A17
WikiGenes10478
SOURCE (Princeton)SLC25A17
Genetics Home Reference (NIH)SLC25A17
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A17  -     chr22:40769630-40819399 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A17  -     22q13.2   [Description]    (hg19-Feb_2009)
EnsemblSLC25A17 - 22q13.2 [CytoView hg19]  SLC25A17 - 22q13.2 [CytoView hg38]
Mapping of homologs : NCBISLC25A17 [Mapview hg19]  SLC25A17 [Mapview hg38]
OMIM606795   
Gene and transcription
Genbank (Entrez)AK094062 AK292924 AK298215 AK300553 AU123445
RefSeq transcript (Entrez)NM_001282726 NM_001282727 NM_006358
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A17
Cluster EST : UnigeneHs.474938 [ NCBI ]
CGAP (NCI)Hs.474938
Alternative Splicing GalleryENSG00000100372
Gene ExpressionSLC25A17 [ NCBI-GEO ]   SLC25A17 [ EBI - ARRAY_EXPRESS ]   SLC25A17 [ SEEK ]   SLC25A17 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10478
GTEX Portal (Tissue expression)SLC25A17
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43808
Splice isoforms : SwissVarO43808
PhosPhoSitePlusO43808
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A17
DMDM Disease mutations10478
Blocks (Seattle)SLC25A17
SuperfamilyO43808
Human Protein AtlasENSG00000100372
Peptide AtlasO43808
HPRD08425
IPIIPI00014440   IPI01011906   IPI00879785   IPI00877594   IPI00878129   IPI00878381   IPI00878761   IPI00878748   IPI00877731   IPI00878072   IPI00877904   IPI00878347   
Protein Interaction databases
DIP (DOE-UCLA)O43808
IntAct (EBI)O43808
FunCoupENSG00000100372
BioGRIDSLC25A17
STRING (EMBL)SLC25A17
ZODIACSLC25A17
Ontologies - Pathways
QuickGOO43808
Ontology : AmiGOadenine nucleotide transmembrane transporter activity  fatty acid alpha-oxidation  ATP transmembrane transporter activity  protein binding  mitochondrial inner membrane  peroxisome  peroxisomal membrane  peroxisomal membrane  integral component of peroxisomal membrane  fatty acid beta-oxidation  mitochondrial transport  ADP transmembrane transporter activity  coenzyme A transmembrane transporter activity  FAD transmembrane transporter activity  ADP transport  ATP transport  fatty acid transport  membrane  coenzyme A transmembrane transport  FAD transmembrane transport  NAD transport  FMN transmembrane transporter activity  chaperone binding  NAD transporter activity  AMP transport  AMP transmembrane transporter activity  
Ontology : EGO-EBIadenine nucleotide transmembrane transporter activity  fatty acid alpha-oxidation  ATP transmembrane transporter activity  protein binding  mitochondrial inner membrane  peroxisome  peroxisomal membrane  peroxisomal membrane  integral component of peroxisomal membrane  fatty acid beta-oxidation  mitochondrial transport  ADP transmembrane transporter activity  coenzyme A transmembrane transporter activity  FAD transmembrane transporter activity  ADP transport  ATP transport  fatty acid transport  membrane  coenzyme A transmembrane transport  FAD transmembrane transport  NAD transport  FMN transmembrane transporter activity  chaperone binding  NAD transporter activity  AMP transport  AMP transmembrane transporter activity  
Pathways : KEGGPeroxisome   
NDEx NetworkSLC25A17
Atlas of Cancer Signalling NetworkSLC25A17
Wikipedia pathwaysSLC25A17
Orthology - Evolution
OrthoDB10478
GeneTree (enSembl)ENSG00000100372
Phylogenetic Trees/Animal Genes : TreeFamSLC25A17
HOVERGENO43808
HOGENOMO43808
Homologs : HomoloGeneSLC25A17
Homology/Alignments : Family Browser (UCSC)SLC25A17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A17
dbVarSLC25A17
ClinVarSLC25A17
1000_GenomesSLC25A17 
Exome Variant ServerSLC25A17
ExAC (Exome Aggregation Consortium)SLC25A17 (select the gene name)
Genetic variants : HAPMAP10478
Genomic Variants (DGV)SLC25A17 [DGVbeta]
DECIPHERSLC25A17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A17 
Mutations
ICGC Data PortalSLC25A17 
TCGA Data PortalSLC25A17 
Broad Tumor PortalSLC25A17
OASIS PortalSLC25A17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A17
DgiDB (Drug Gene Interaction Database)SLC25A17
DoCM (Curated mutations)SLC25A17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A17 (select a term)
intoGenSLC25A17
Cancer3DSLC25A17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606795   
Orphanet
MedgenSLC25A17
Genetic Testing Registry SLC25A17
NextProtO43808 [Medical]
TSGene10478
GENETestsSLC25A17
Target ValidationSLC25A17
Huge Navigator SLC25A17 [HugePedia]
snp3D : Map Gene to Disease10478
BioCentury BCIQSLC25A17
ClinGenSLC25A17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10478
Chemical/Pharm GKB GenePA35863
Clinical trialSLC25A17
Miscellaneous
canSAR (ICR)SLC25A17 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A17
EVEXSLC25A17
GoPubMedSLC25A17
iHOPSLC25A17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:01 CEST 2017

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