Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A17 (solute carrier family 25 member 17)

Identity

Alias (NCBI)PMP34
HGNC (Hugo) SLC25A17
HGNC Alias symbPMP34
HGNC Alias nameperoxisomal membrane protein (34kD)
HGNC Previous namesolute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kD), member 17
 solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17
LocusID (NCBI) 10478
Atlas_Id 73340
Location 22q13.2  [Link to chromosome band 22q13]
Location_base_pair Starts at 40769630 and ends at 40819346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MKL1 (22q13.1)::SLC25A17 (22q13.2)SLC25A17 (22q13.2)::EPN3 (17q21.33)SLC25A17 (22q13.2)::RBFOX2 (22q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC25A17   10987
Cards
Entrez_Gene (NCBI)SLC25A17    solute carrier family 25 member 17
AliasesPMP34
GeneCards (Weizmann)SLC25A17
Ensembl hg19 (Hinxton)ENSG00000100372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100372 [Gene_View]  ENSG00000100372 [Sequence]  chr22:40769630-40819346 [Contig_View]  SLC25A17 [Vega]
ICGC DataPortalENSG00000100372
TCGA cBioPortalSLC25A17
AceView (NCBI)SLC25A17
Genatlas (Paris)SLC25A17
SOURCE (Princeton)SLC25A17
Genetics Home Reference (NIH)SLC25A17
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A17  -     chr22:40769630-40819346 -  22q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A17  -     22q13.2   [Description]    (hg19-Feb_2009)
GoldenPathSLC25A17 - 22q13.2 [CytoView hg19]  SLC25A17 - 22q13.2 [CytoView hg38]
ImmunoBaseENSG00000100372
Genome Data Viewer NCBISLC25A17 [Mapview hg19]  
OMIM606795   
Gene and transcription
Genbank (Entrez)AK094062 AK292924 AK298215 AK300553 AU123445
RefSeq transcript (Entrez)NM_001282726 NM_001282727 NM_006358
Consensus coding sequences : CCDS (NCBI)SLC25A17
Gene ExpressionSLC25A17 [ NCBI-GEO ]   SLC25A17 [ EBI - ARRAY_EXPRESS ]   SLC25A17 [ SEEK ]   SLC25A17 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A17 [ Firebrowse - Broad ]
GenevisibleExpression of SLC25A17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10478
GTEX Portal (Tissue expression)SLC25A17
Human Protein AtlasENSG00000100372-SLC25A17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43808
PhosPhoSitePlusO43808
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom_sf   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A17
SuperfamilyO43808
AlphaFold pdb e-kbO43808   
Human Protein Atlas [tissue]ENSG00000100372-SLC25A17 [tissue]
HPRD08425
Protein Interaction databases
DIP (DOE-UCLA)O43808
IntAct (EBI)O43808
BioGRIDSLC25A17
STRING (EMBL)SLC25A17
ZODIACSLC25A17
Ontologies - Pathways
QuickGOO43808
Ontology : AmiGOfatty acid alpha-oxidation  ATP transmembrane transporter activity  ATP transmembrane transporter activity  protein binding  peroxisome  peroxisomal membrane  peroxisomal membrane  integral component of peroxisomal membrane  integral component of peroxisomal membrane  cytosol  fatty acid beta-oxidation  ADP transmembrane transporter activity  ADP transmembrane transporter activity  coenzyme A transmembrane transporter activity  coenzyme A transmembrane transporter activity  FAD transmembrane transporter activity  FAD transmembrane transporter activity  ADP transport  ATP transport  fatty acid transport  membrane  coenzyme A transmembrane transport  FAD transmembrane transport  NAD transmembrane transport  FMN transmembrane transporter activity  FMN transmembrane transporter activity  protein import into peroxisome membrane  chaperone binding  NAD transmembrane transporter activity  NAD transmembrane transporter activity  AMP transport  AMP transmembrane transporter activity  AMP transmembrane transporter activity  
Ontology : EGO-EBIfatty acid alpha-oxidation  ATP transmembrane transporter activity  ATP transmembrane transporter activity  protein binding  peroxisome  peroxisomal membrane  peroxisomal membrane  integral component of peroxisomal membrane  integral component of peroxisomal membrane  cytosol  fatty acid beta-oxidation  ADP transmembrane transporter activity  ADP transmembrane transporter activity  coenzyme A transmembrane transporter activity  coenzyme A transmembrane transporter activity  FAD transmembrane transporter activity  FAD transmembrane transporter activity  ADP transport  ATP transport  fatty acid transport  membrane  coenzyme A transmembrane transport  FAD transmembrane transport  NAD transmembrane transport  FMN transmembrane transporter activity  FMN transmembrane transporter activity  protein import into peroxisome membrane  chaperone binding  NAD transmembrane transporter activity  NAD transmembrane transporter activity  AMP transport  AMP transmembrane transporter activity  AMP transmembrane transporter activity  
NDEx NetworkSLC25A17
Atlas of Cancer Signalling NetworkSLC25A17
Wikipedia pathwaysSLC25A17
Orthology - Evolution
OrthoDB10478
GeneTree (enSembl)ENSG00000100372
Phylogenetic Trees/Animal Genes : TreeFamSLC25A17
Homologs : HomoloGeneSLC25A17
Homology/Alignments : Family Browser (UCSC)SLC25A17
Gene fusions - Rearrangements
Fusion : QuiverSLC25A17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A17
dbVarSLC25A17
ClinVarSLC25A17
MonarchSLC25A17
1000_GenomesSLC25A17 
Exome Variant ServerSLC25A17
GNOMAD BrowserENSG00000100372
Varsome BrowserSLC25A17
ACMGSLC25A17 variants
VarityO43808
Genomic Variants (DGV)SLC25A17 [DGVbeta]
DECIPHERSLC25A17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A17 
Mutations
ICGC Data PortalSLC25A17 
TCGA Data PortalSLC25A17 
Broad Tumor PortalSLC25A17
OASIS PortalSLC25A17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC25A17
Mutations and Diseases : HGMDSLC25A17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC25A17
DgiDB (Drug Gene Interaction Database)SLC25A17
DoCM (Curated mutations)SLC25A17
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A17
Cancer3DSLC25A17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606795   
Orphanet
DisGeNETSLC25A17
MedgenSLC25A17
Genetic Testing Registry SLC25A17
NextProtO43808 [Medical]
GENETestsSLC25A17
Target ValidationSLC25A17
Huge Navigator SLC25A17 [HugePedia]
ClinGenSLC25A17
Clinical trials, drugs, therapy
MyCancerGenomeSLC25A17
Protein Interactions : CTDSLC25A17
Pharm GKB GenePA35863
PharosO43808
Clinical trialSLC25A17
Miscellaneous
canSAR (ICR)SLC25A17
HarmonizomeSLC25A17
ARCHS4SLC25A17
DataMed IndexSLC25A17
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC25A17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:24:15 CET 2022

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