Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC25A18 (solute carrier family 25 (glutamate carrier), member 18)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier), member 18
solute carrier family 25 (glutamate carrier), member 18
Other aliasGC2
HGNC (Hugo) SLC25A18
LocusID (NCBI) 83733
Atlas_Id 73341
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18043139 and ends at 18073656 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MICAL3 (22q11.21) / SLC25A18 (22q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A18   10988
Cards
Entrez_Gene (NCBI)SLC25A18  83733  solute carrier family 25 (glutamate carrier), member 18
AliasesGC2
GeneCards (Weizmann)SLC25A18
Ensembl hg19 (Hinxton)ENSG00000182902 [Gene_View]  chr22:18043139-18073656 [Contig_View]  SLC25A18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182902 [Gene_View]  chr22:18043139-18073656 [Contig_View]  SLC25A18 [Vega]
ICGC DataPortalENSG00000182902
TCGA cBioPortalSLC25A18
AceView (NCBI)SLC25A18
Genatlas (Paris)SLC25A18
WikiGenes83733
SOURCE (Princeton)SLC25A18
Genetics Home Reference (NIH)SLC25A18
Genomic and cartography
GoldenPath hg19 (UCSC)SLC25A18  -     chr22:18043139-18073656 +  22q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC25A18  -     22q11.21   [Description]    (hg38-Dec_2013)
EnsemblSLC25A18 - 22q11.21 [CytoView hg19]  SLC25A18 - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBISLC25A18 [Mapview hg19]  SLC25A18 [Mapview hg38]
OMIM609303   
Gene and transcription
Genbank (Entrez)AJ428203 AK095706 AK308974 AK309110 AY008285
RefSeq transcript (Entrez)NM_001303484 NM_031481
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_187355 NW_004929429
Consensus coding sequences : CCDS (NCBI)SLC25A18
Cluster EST : UnigeneHs.282982 [ NCBI ]
CGAP (NCI)Hs.282982
Alternative Splicing GalleryENSG00000182902
Gene ExpressionSLC25A18 [ NCBI-GEO ]   SLC25A18 [ EBI - ARRAY_EXPRESS ]   SLC25A18 [ SEEK ]   SLC25A18 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83733
GTEX Portal (Tissue expression)SLC25A18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1K4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1K4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1K4
Splice isoforms : SwissVarQ9H1K4
PhosPhoSitePlusQ9H1K4
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A18
DMDM Disease mutations83733
Blocks (Seattle)SLC25A18
SuperfamilyQ9H1K4
Human Protein AtlasENSG00000182902
Peptide AtlasQ9H1K4
HPRD15355
IPIIPI00027826   IPI00745672   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1K4
IntAct (EBI)Q9H1K4
FunCoupENSG00000182902
BioGRIDSLC25A18
STRING (EMBL)SLC25A18
ZODIACSLC25A18
Ontologies - Pathways
QuickGOQ9H1K4
Ontology : AmiGOprotein binding  mitochondrial inner membrane  symporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIprotein binding  mitochondrial inner membrane  symporter activity  integral component of membrane  transmembrane transport  
Pathways : BIOCARTAVisual Signal Transduction [Genes]   
NDEx NetworkSLC25A18
Atlas of Cancer Signalling NetworkSLC25A18
Wikipedia pathwaysSLC25A18
Orthology - Evolution
OrthoDB83733
GeneTree (enSembl)ENSG00000182902
Phylogenetic Trees/Animal Genes : TreeFamSLC25A18
HOVERGENQ9H1K4
HOGENOMQ9H1K4
Homologs : HomoloGeneSLC25A18
Homology/Alignments : Family Browser (UCSC)SLC25A18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A18
dbVarSLC25A18
ClinVarSLC25A18
1000_GenomesSLC25A18 
Exome Variant ServerSLC25A18
ExAC (Exome Aggregation Consortium)SLC25A18 (select the gene name)
Genetic variants : HAPMAP83733
Genomic Variants (DGV)SLC25A18 [DGVbeta]
DECIPHER (Syndromes)22:18043139-18073656  ENSG00000182902
CONAN: Copy Number AnalysisSLC25A18 
Mutations
ICGC Data PortalSLC25A18 
TCGA Data PortalSLC25A18 
Broad Tumor PortalSLC25A18
OASIS PortalSLC25A18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A18
DgiDB (Drug Gene Interaction Database)SLC25A18
DoCM (Curated mutations)SLC25A18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A18 (select a term)
intoGenSLC25A18
Cancer3DSLC25A18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609303   
Orphanet
MedgenSLC25A18
Genetic Testing Registry SLC25A18
NextProtQ9H1K4 [Medical]
TSGene83733
GENETestsSLC25A18
Huge Navigator SLC25A18 [HugePedia]
snp3D : Map Gene to Disease83733
BioCentury BCIQSLC25A18
ClinGenSLC25A18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83733
Chemical/Pharm GKB GenePA35864
Clinical trialSLC25A18
Miscellaneous
canSAR (ICR)SLC25A18 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A18
EVEXSLC25A18
GoPubMedSLC25A18
iHOPSLC25A18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:28 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.