Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC25A19 (solute carrier family 25 member 19)

Identity

Alias (NCBI)DNC
MCPHA
MUP1
THMD3
THMD4
TPC
HGNC (Hugo) SLC25A19
HGNC Alias symbDNC
MUP1
TPC
HGNC Previous nameMCPHA
HGNC Previous namesolute carrier family 25 (mitochondrial deoxynucleotide carrier), member 19
 microcephaly, Amish
 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
LocusID (NCBI) 60386
Atlas_Id 53717
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75272980 and ends at 75289449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC25A19 (17q25.1) / HPR (16q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC25A19   14409
Cards
Entrez_Gene (NCBI)SLC25A19    solute carrier family 25 member 19
AliasesDNC; MCPHA; MUP1; THMD3; 
THMD4; TPC
GeneCards (Weizmann)SLC25A19
Ensembl hg19 (Hinxton)ENSG00000125454 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125454 [Gene_View]  ENSG00000125454 [Sequence]  chr17:75272980-75289449 [Contig_View]  SLC25A19 [Vega]
ICGC DataPortalENSG00000125454
TCGA cBioPortalSLC25A19
AceView (NCBI)SLC25A19
Genatlas (Paris)SLC25A19
SOURCE (Princeton)SLC25A19
Genetics Home Reference (NIH)SLC25A19
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A19  -     chr17:75272980-75289449 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A19  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathSLC25A19 - 17q25.1 [CytoView hg19]  SLC25A19 - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000125454
Genome Data Viewer NCBISLC25A19 [Mapview hg19]  
OMIM606521   607196   613710   
Gene and transcription
Genbank (Entrez)AA743427 AF182404 AJ251857 AK075239 AK097882
RefSeq transcript (Entrez)NM_001126121 NM_001126122 NM_021734
Consensus coding sequences : CCDS (NCBI)SLC25A19
Gene ExpressionSLC25A19 [ NCBI-GEO ]   SLC25A19 [ EBI - ARRAY_EXPRESS ]   SLC25A19 [ SEEK ]   SLC25A19 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A19 [ Firebrowse - Broad ]
GenevisibleExpression of SLC25A19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60386
GTEX Portal (Tissue expression)SLC25A19
Human Protein AtlasENSG00000125454-SLC25A19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC21
PhosPhoSitePlusQ9HC21
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom_sf   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A19
SuperfamilyQ9HC21
AlphaFold pdb e-kbQ9HC21   
Human Protein Atlas [tissue]ENSG00000125454-SLC25A19 [tissue]
HPRD08405
Protein Interaction databases
DIP (DOE-UCLA)Q9HC21
IntAct (EBI)Q9HC21
BioGRIDSLC25A19
STRING (EMBL)SLC25A19
ZODIACSLC25A19
Ontologies - Pathways
QuickGOQ9HC21
Ontology : AmiGOnucleus  mitochondrial inner membrane  thiamine transmembrane transporter activity  deoxynucleotide transmembrane transporter activity  deoxynucleotide transport  thiamine pyrophosphate transmembrane transport  integral component of mitochondrial inner membrane  thiamine-containing compound metabolic process  thiamine transmembrane transport  
Ontology : EGO-EBInucleus  mitochondrial inner membrane  thiamine transmembrane transporter activity  deoxynucleotide transmembrane transporter activity  deoxynucleotide transport  thiamine pyrophosphate transmembrane transport  integral component of mitochondrial inner membrane  thiamine-containing compound metabolic process  thiamine transmembrane transport  
NDEx NetworkSLC25A19
Atlas of Cancer Signalling NetworkSLC25A19
Wikipedia pathwaysSLC25A19
Orthology - Evolution
OrthoDB60386
GeneTree (enSembl)ENSG00000125454
Phylogenetic Trees/Animal Genes : TreeFamSLC25A19
Homologs : HomoloGeneSLC25A19
Homology/Alignments : Family Browser (UCSC)SLC25A19
Gene fusions - Rearrangements
Fusion : QuiverSLC25A19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A19
dbVarSLC25A19
ClinVarSLC25A19
MonarchSLC25A19
1000_GenomesSLC25A19 
Exome Variant ServerSLC25A19
GNOMAD BrowserENSG00000125454
Varsome BrowserSLC25A19
ACMGSLC25A19 variants
VarityQ9HC21
Genomic Variants (DGV)SLC25A19 [DGVbeta]
DECIPHERSLC25A19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A19 
Mutations
ICGC Data PortalSLC25A19 
TCGA Data PortalSLC25A19 
Broad Tumor PortalSLC25A19
OASIS PortalSLC25A19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC25A19
Mutations and Diseases : HGMDSLC25A19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC25A19
DgiDB (Drug Gene Interaction Database)SLC25A19
DoCM (Curated mutations)SLC25A19
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A19
Cancer3DSLC25A19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606521    607196    613710   
Orphanet18854    14315   
DisGeNETSLC25A19
MedgenSLC25A19
Genetic Testing Registry SLC25A19
NextProtQ9HC21 [Medical]
GENETestsSLC25A19
Target ValidationSLC25A19
Huge Navigator SLC25A19 [HugePedia]
ClinGenSLC25A19
Clinical trials, drugs, therapy
MyCancerGenomeSLC25A19
Protein Interactions : CTDSLC25A19
Pharm GKB GenePA37879
PharosQ9HC21
Clinical trialSLC25A19
Miscellaneous
canSAR (ICR)SLC25A19
HarmonizomeSLC25A19
DataMed IndexSLC25A19
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC25A19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:31:31 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.