Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A2 (solute carrier family 25 member 2)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2
Alias_symbol (synonym)ORNT2
Other aliasORC2
HGNC (Hugo) SLC25A2
LocusID (NCBI) 83884
Atlas_Id 73342
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 141302629 and ends at 141304063 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A2   22921
Cards
Entrez_Gene (NCBI)SLC25A2  83884  solute carrier family 25 member 2
AliasesORC2; ORNT2
GeneCards (Weizmann)SLC25A2
Ensembl hg19 (Hinxton)ENSG00000120329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120329 [Gene_View]  chr5:141302629-141304063 [Contig_View]  SLC25A2 [Vega]
ICGC DataPortalENSG00000120329
TCGA cBioPortalSLC25A2
AceView (NCBI)SLC25A2
Genatlas (Paris)SLC25A2
WikiGenes83884
SOURCE (Princeton)SLC25A2
Genetics Home Reference (NIH)SLC25A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A2  -     chr5:141302629-141304063 -  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A2  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblSLC25A2 - 5q31.3 [CytoView hg19]  SLC25A2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBISLC25A2 [Mapview hg19]  SLC25A2 [Mapview hg38]
OMIM608157   
Gene and transcription
Genbank (Entrez)AF332005 AF378119 AY208943 BC069458 BC100935
RefSeq transcript (Entrez)NM_031947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A2
Cluster EST : UnigeneHs.97647 [ NCBI ]
CGAP (NCI)Hs.97647
Alternative Splicing GalleryENSG00000120329
Gene ExpressionSLC25A2 [ NCBI-GEO ]   SLC25A2 [ EBI - ARRAY_EXPRESS ]   SLC25A2 [ SEEK ]   SLC25A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83884
GTEX Portal (Tissue expression)SLC25A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXI2
Splice isoforms : SwissVarQ9BXI2
PhosPhoSitePlusQ9BXI2
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A2
DMDM Disease mutations83884
Blocks (Seattle)SLC25A2
SuperfamilyQ9BXI2
Human Protein AtlasENSG00000120329
Peptide AtlasQ9BXI2
HPRD12180
IPIIPI00011190   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXI2
IntAct (EBI)Q9BXI2
FunCoupENSG00000120329
BioGRIDSLC25A2
STRING (EMBL)SLC25A2
ZODIACSLC25A2
Ontologies - Pathways
QuickGOQ9BXI2
Ontology : AmiGOurea cycle  L-ornithine transmembrane transporter activity  L-ornithine transmembrane transporter activity  mitochondrial ornithine transport  mitochondrial inner membrane  mitochondrial inner membrane  integral component of membrane  L-ornithine transmembrane transport  
Ontology : EGO-EBIurea cycle  L-ornithine transmembrane transporter activity  L-ornithine transmembrane transporter activity  mitochondrial ornithine transport  mitochondrial inner membrane  mitochondrial inner membrane  integral component of membrane  L-ornithine transmembrane transport  
NDEx NetworkSLC25A2
Atlas of Cancer Signalling NetworkSLC25A2
Wikipedia pathwaysSLC25A2
Orthology - Evolution
OrthoDB83884
GeneTree (enSembl)ENSG00000120329
Phylogenetic Trees/Animal Genes : TreeFamSLC25A2
HOVERGENQ9BXI2
HOGENOMQ9BXI2
Homologs : HomoloGeneSLC25A2
Homology/Alignments : Family Browser (UCSC)SLC25A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A2
dbVarSLC25A2
ClinVarSLC25A2
1000_GenomesSLC25A2 
Exome Variant ServerSLC25A2
ExAC (Exome Aggregation Consortium)SLC25A2 (select the gene name)
Genetic variants : HAPMAP83884
Genomic Variants (DGV)SLC25A2 [DGVbeta]
DECIPHERSLC25A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A2 
Mutations
ICGC Data PortalSLC25A2 
TCGA Data PortalSLC25A2 
Broad Tumor PortalSLC25A2
OASIS PortalSLC25A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A2
DgiDB (Drug Gene Interaction Database)SLC25A2
DoCM (Curated mutations)SLC25A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A2 (select a term)
intoGenSLC25A2
Cancer3DSLC25A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608157   
Orphanet
MedgenSLC25A2
Genetic Testing Registry SLC25A2
NextProtQ9BXI2 [Medical]
TSGene83884
GENETestsSLC25A2
Target ValidationSLC25A2
Huge Navigator SLC25A2 [HugePedia]
snp3D : Map Gene to Disease83884
BioCentury BCIQSLC25A2
ClinGenSLC25A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83884
Chemical/Pharm GKB GenePA134910073
Clinical trialSLC25A2
Miscellaneous
canSAR (ICR)SLC25A2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A2
EVEXSLC25A2
GoPubMedSLC25A2
iHOPSLC25A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:02 CEST 2017

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