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SLC25A20 (solute carrier family 25 member 20)

Identity

Alias_namesCACT
solute carrier family 25 (carnitine/acylcarnitine translocase), member 20
Alias_symbol (synonym)CAC
Other alias
HGNC (Hugo) SLC25A20
LocusID (NCBI) 788
Atlas_Id 73343
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48856923 and ends at 48898993 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARIH2 (3p21.31) / SLC25A20 (3p21.31)PRKAR2A (3p21.31) / SLC25A20 (3p21.31)SCAP (3p21.31) / SLC25A20 (3p21.31)
ARIH2 SLC25A20SCAP SLC25A20

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A20   1421
Cards
Entrez_Gene (NCBI)SLC25A20  788  solute carrier family 25 member 20
AliasesCAC; CACT
GeneCards (Weizmann)SLC25A20
Ensembl hg19 (Hinxton)ENSG00000178537 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178537 [Gene_View]  chr3:48856923-48898993 [Contig_View]  SLC25A20 [Vega]
ICGC DataPortalENSG00000178537
TCGA cBioPortalSLC25A20
AceView (NCBI)SLC25A20
Genatlas (Paris)SLC25A20
WikiGenes788
SOURCE (Princeton)SLC25A20
Genetics Home Reference (NIH)SLC25A20
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A20  -     chr3:48856923-48898993 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A20  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblSLC25A20 - 3p21.31 [CytoView hg19]  SLC25A20 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBISLC25A20 [Mapview hg19]  SLC25A20 [Mapview hg38]
OMIM212138   613698   
Gene and transcription
Genbank (Entrez)AK301744 AK312962 BC001689 BI913588 BQ018220
RefSeq transcript (Entrez)NM_000387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A20
Cluster EST : UnigeneHs.13845 [ NCBI ]
CGAP (NCI)Hs.13845
Alternative Splicing GalleryENSG00000178537
Gene ExpressionSLC25A20 [ NCBI-GEO ]   SLC25A20 [ EBI - ARRAY_EXPRESS ]   SLC25A20 [ SEEK ]   SLC25A20 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)788
GTEX Portal (Tissue expression)SLC25A20
Human Protein AtlasENSG00000178537-SLC25A20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43772   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43772  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43772
Splice isoforms : SwissVarO43772
PhosPhoSitePlusO43772
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A20
DMDM Disease mutations788
Blocks (Seattle)SLC25A20
SuperfamilyO43772
Human Protein Atlas [tissue]ENSG00000178537-SLC25A20 [tissue]
Peptide AtlasO43772
HPRD01953
IPIIPI00013957   IPI01010071   IPI00926978   IPI00927166   
Protein Interaction databases
DIP (DOE-UCLA)O43772
IntAct (EBI)O43772
FunCoupENSG00000178537
BioGRIDSLC25A20
STRING (EMBL)SLC25A20
ZODIACSLC25A20
Ontologies - Pathways
QuickGOO43772
Ontology : AmiGOcarnitine:acyl carnitine antiporter activity  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  cytosol  mitochondrial transport  carnitine shuttle  carnitine transmembrane transporter activity  acyl carnitine transmembrane transporter activity  carnitine transport  integral component of membrane  carnitine transmembrane transport  acyl carnitine transmembrane transport  
Ontology : EGO-EBIcarnitine:acyl carnitine antiporter activity  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  cytosol  mitochondrial transport  carnitine shuttle  carnitine transmembrane transporter activity  acyl carnitine transmembrane transporter activity  carnitine transport  integral component of membrane  carnitine transmembrane transport  acyl carnitine transmembrane transport  
Pathways : BIOCARTAMitochondrial Carnitine Palmitoyltransferase (CPT) System [Genes]   
NDEx NetworkSLC25A20
Atlas of Cancer Signalling NetworkSLC25A20
Wikipedia pathwaysSLC25A20
Orthology - Evolution
OrthoDB788
GeneTree (enSembl)ENSG00000178537
Phylogenetic Trees/Animal Genes : TreeFamSLC25A20
HOVERGENO43772
HOGENOMO43772
Homologs : HomoloGeneSLC25A20
Homology/Alignments : Family Browser (UCSC)SLC25A20
Gene fusions - Rearrangements
Fusion: TCGAARIH2 SLC25A20
Fusion: TCGASCAP SLC25A20
Fusion: Tumor Portal SLC25A20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A20
dbVarSLC25A20
ClinVarSLC25A20
1000_GenomesSLC25A20 
Exome Variant ServerSLC25A20
ExAC (Exome Aggregation Consortium)ENSG00000178537
GNOMAD BrowserENSG00000178537
Genetic variants : HAPMAP788
Genomic Variants (DGV)SLC25A20 [DGVbeta]
DECIPHERSLC25A20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A20 
Mutations
ICGC Data PortalSLC25A20 
TCGA Data PortalSLC25A20 
Broad Tumor PortalSLC25A20
OASIS PortalSLC25A20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A20
DgiDB (Drug Gene Interaction Database)SLC25A20
DoCM (Curated mutations)SLC25A20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A20 (select a term)
intoGenSLC25A20
Cancer3DSLC25A20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM212138    613698   
Orphanet3343   
MedgenSLC25A20
Genetic Testing Registry SLC25A20
NextProtO43772 [Medical]
TSGene788
GENETestsSLC25A20
Target ValidationSLC25A20
Huge Navigator SLC25A20 [HugePedia]
snp3D : Map Gene to Disease788
BioCentury BCIQSLC25A20
ClinGenSLC25A20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD788
Chemical/Pharm GKB GenePA35031
Clinical trialSLC25A20
Miscellaneous
canSAR (ICR)SLC25A20 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A20
EVEXSLC25A20
GoPubMedSLC25A20
iHOPSLC25A20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:24 CET 2017

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