Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A22 (solute carrier family 25 member 22)

Identity

Other aliasEIEE3
GC-1
GC1
NET44
HGNC (Hugo) SLC25A22
LocusID (NCBI) 79751
Atlas_Id 57002
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 790475 and ends at 797995 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A22   19954
Cards
Entrez_Gene (NCBI)SLC25A22  79751  solute carrier family 25 member 22
AliasesEIEE3; GC-1; GC1; NET44
GeneCards (Weizmann)SLC25A22
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:790475-797995 [Contig_View]  SLC25A22 [Vega]
TCGA cBioPortalSLC25A22
AceView (NCBI)SLC25A22
Genatlas (Paris)SLC25A22
WikiGenes79751
SOURCE (Princeton)SLC25A22
Genetics Home Reference (NIH)SLC25A22
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A22  -     chr11:790475-797995 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A22  -     11p15.5   [Description]    (hg19-Feb_2009)
EnsemblSLC25A22 - 11p15.5 [CytoView hg19]  SLC25A22 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBISLC25A22 [Mapview hg19]  SLC25A22 [Mapview hg38]
OMIM609302   609304   
Gene and transcription
Genbank (Entrez)AA723654 AJ428202 AK023106 AK290481 AK311038
RefSeq transcript (Entrez)NM_001191060 NM_001191061 NM_024698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A22
Cluster EST : UnigeneHs.99486 [ NCBI ]
CGAP (NCI)Hs.99486
Gene ExpressionSLC25A22 [ NCBI-GEO ]   SLC25A22 [ EBI - ARRAY_EXPRESS ]   SLC25A22 [ SEEK ]   SLC25A22 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79751
GTEX Portal (Tissue expression)SLC25A22
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H936   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H936  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H936
Splice isoforms : SwissVarQ9H936
PhosPhoSitePlusQ9H936
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A22
DMDM Disease mutations79751
Blocks (Seattle)SLC25A22
SuperfamilyQ9H936
Peptide AtlasQ9H936
IPIIPI00003004   IPI00979418   IPI00980909   IPI01015493   IPI00983199   IPI00983707   IPI00984522   IPI00981673   IPI00977230   IPI00977837   IPI00984810   IPI00980990   IPI00985174   IPI00985457   
Protein Interaction databases
DIP (DOE-UCLA)Q9H936
IntAct (EBI)Q9H936
BioGRIDSLC25A22
STRING (EMBL)SLC25A22
ZODIACSLC25A22
Ontologies - Pathways
QuickGOQ9H936
Ontology : AmiGOhydrogen:amino acid symporter activity  L-glutamate transmembrane transporter activity  high-affinity glutamate transmembrane transporter activity  mitochondrial inner membrane  mitochondrial inner membrane  ion transport  mitochondrial transport  L-glutamate transport  proton transport  integral component of membrane  L-glutamate transmembrane transport  
Ontology : EGO-EBIhydrogen:amino acid symporter activity  L-glutamate transmembrane transporter activity  high-affinity glutamate transmembrane transporter activity  mitochondrial inner membrane  mitochondrial inner membrane  ion transport  mitochondrial transport  L-glutamate transport  proton transport  integral component of membrane  L-glutamate transmembrane transport  
Pathways : BIOCARTAVisual Signal Transduction [Genes]   
NDEx NetworkSLC25A22
Atlas of Cancer Signalling NetworkSLC25A22
Wikipedia pathwaysSLC25A22
Orthology - Evolution
OrthoDB79751
Phylogenetic Trees/Animal Genes : TreeFamSLC25A22
HOVERGENQ9H936
HOGENOMQ9H936
Homologs : HomoloGeneSLC25A22
Homology/Alignments : Family Browser (UCSC)SLC25A22
Gene fusions - Rearrangements
Tumor Fusion PortalSLC25A22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A22
dbVarSLC25A22
ClinVarSLC25A22
1000_GenomesSLC25A22 
Exome Variant ServerSLC25A22
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP79751
Genomic Variants (DGV)SLC25A22 [DGVbeta]
DECIPHERSLC25A22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A22 
Mutations
ICGC Data PortalSLC25A22 
TCGA Data PortalSLC25A22 
Broad Tumor PortalSLC25A22
OASIS PortalSLC25A22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A22  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A22
DgiDB (Drug Gene Interaction Database)SLC25A22
DoCM (Curated mutations)SLC25A22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A22 (select a term)
intoGenSLC25A22
Cancer3DSLC25A22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609302    609304   
Orphanet
DisGeNETSLC25A22
MedgenSLC25A22
Genetic Testing Registry SLC25A22
NextProtQ9H936 [Medical]
TSGene79751
GENETestsSLC25A22
Target ValidationSLC25A22
Huge Navigator SLC25A22 [HugePedia]
snp3D : Map Gene to Disease79751
BioCentury BCIQSLC25A22
ClinGenSLC25A22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79751
Chemical/Pharm GKB GenePA134955826
Clinical trialSLC25A22
Miscellaneous
canSAR (ICR)SLC25A22 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A22
EVEXSLC25A22
GoPubMedSLC25A22
iHOPSLC25A22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:34:58 CET 2017

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