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SLC25A23 (solute carrier family 25 member 23)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
Alias_symbol (synonym)FLJ30339
MGC2615
APC2
Other aliasMCSC2
SCaMC-3
HGNC (Hugo) SLC25A23
LocusID (NCBI) 79085
Atlas_Id 73347
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6440064 and ends at 6459770 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C19orf25 (19p13.3) / SLC25A23 (19p13.3)HNRNPM (19p13.2) / SLC25A23 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A23   19375
Cards
Entrez_Gene (NCBI)SLC25A23  79085  solute carrier family 25 member 23
AliasesAPC2; MCSC2; SCaMC-3
GeneCards (Weizmann)SLC25A23
Ensembl hg19 (Hinxton)ENSG00000125648 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125648 [Gene_View]  chr19:6440064-6459770 [Contig_View]  SLC25A23 [Vega]
ICGC DataPortalENSG00000125648
TCGA cBioPortalSLC25A23
AceView (NCBI)SLC25A23
Genatlas (Paris)SLC25A23
WikiGenes79085
SOURCE (Princeton)SLC25A23
Genetics Home Reference (NIH)SLC25A23
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A23  -     chr19:6440064-6459770 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A23  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC25A23 - 19p13.3 [CytoView hg19]  SLC25A23 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBISLC25A23 [Mapview hg19]  SLC25A23 [Mapview hg38]
OMIM608746   
Gene and transcription
Genbank (Entrez)AJ512835 AJ619962 AJ619988 AJ879080 AJ879081
RefSeq transcript (Entrez)NM_024103
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A23
Cluster EST : UnigeneHs.732434 [ NCBI ]
CGAP (NCI)Hs.732434
Alternative Splicing GalleryENSG00000125648
Gene ExpressionSLC25A23 [ NCBI-GEO ]   SLC25A23 [ EBI - ARRAY_EXPRESS ]   SLC25A23 [ SEEK ]   SLC25A23 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79085
GTEX Portal (Tissue expression)SLC25A23
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV35
Splice isoforms : SwissVarQ9BV35
PhosPhoSitePlusQ9BV35
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    SOLCAR (PS50920)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)    EF-hand_7 (PF13499)    Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam13202    pfam13499    pfam00153   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)SLC25A23
DMDM Disease mutations79085
Blocks (Seattle)SLC25A23
SuperfamilyQ9BV35
Human Protein AtlasENSG00000125648
Peptide AtlasQ9BV35
HPRD16381
IPIIPI00419997   IPI00479721   IPI00885199   IPI00884969   IPI00910101   IPI00885117   IPI00012203   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV35
IntAct (EBI)Q9BV35
FunCoupENSG00000125648
BioGRIDSLC25A23
STRING (EMBL)SLC25A23
ZODIACSLC25A23
Ontologies - Pathways
QuickGOQ9BV35
Ontology : AmiGOregulation of oxidative phosphorylation  ATP transmembrane transporter activity  calcium ion binding  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial calcium ion transmembrane transport  ADP transmembrane transporter activity  ADP transport  ATP transport  integral component of membrane  mitochondrial calcium uptake  regulation of cellular respiration  regulation of sequestering of calcium ion  cellular response to calcium ion  urea homeostasis  
Ontology : EGO-EBIregulation of oxidative phosphorylation  ATP transmembrane transporter activity  calcium ion binding  protein binding  mitochondrion  mitochondrial inner membrane  mitochondrial calcium ion transmembrane transport  ADP transmembrane transporter activity  ADP transport  ATP transport  integral component of membrane  mitochondrial calcium uptake  regulation of cellular respiration  regulation of sequestering of calcium ion  cellular response to calcium ion  urea homeostasis  
NDEx NetworkSLC25A23
Atlas of Cancer Signalling NetworkSLC25A23
Wikipedia pathwaysSLC25A23
Orthology - Evolution
OrthoDB79085
GeneTree (enSembl)ENSG00000125648
Phylogenetic Trees/Animal Genes : TreeFamSLC25A23
HOVERGENQ9BV35
HOGENOMQ9BV35
Homologs : HomoloGeneSLC25A23
Homology/Alignments : Family Browser (UCSC)SLC25A23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A23
dbVarSLC25A23
ClinVarSLC25A23
1000_GenomesSLC25A23 
Exome Variant ServerSLC25A23
ExAC (Exome Aggregation Consortium)SLC25A23 (select the gene name)
Genetic variants : HAPMAP79085
Genomic Variants (DGV)SLC25A23 [DGVbeta]
DECIPHERSLC25A23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A23 
Mutations
ICGC Data PortalSLC25A23 
TCGA Data PortalSLC25A23 
Broad Tumor PortalSLC25A23
OASIS PortalSLC25A23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A23
DgiDB (Drug Gene Interaction Database)SLC25A23
DoCM (Curated mutations)SLC25A23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A23 (select a term)
intoGenSLC25A23
Cancer3DSLC25A23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608746   
Orphanet
MedgenSLC25A23
Genetic Testing Registry SLC25A23
NextProtQ9BV35 [Medical]
TSGene79085
GENETestsSLC25A23
Target ValidationSLC25A23
Huge Navigator SLC25A23 [HugePedia]
snp3D : Map Gene to Disease79085
BioCentury BCIQSLC25A23
ClinGenSLC25A23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79085
Chemical/Pharm GKB GenePA134932456
Clinical trialSLC25A23
Miscellaneous
canSAR (ICR)SLC25A23 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A23
EVEXSLC25A23
GoPubMedSLC25A23
iHOPSLC25A23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:03 CEST 2017

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