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SLC25A24 (solute carrier family 25 member 24)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier
Alias_symbol (synonym)DKFZp586G0123
APC1
Other aliasSCAMC-1
HGNC (Hugo) SLC25A24
LocusID (NCBI) 29957
Atlas_Id 54627
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 108134722 and ends at 108200358 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM102B (1p13.3) / SLC25A24 (1p13.3)KMT2A (11q23.3) / SLC25A24 (1p13.3)SLC25A24 (1p13.3) / DHRS12 (13q14.3)
SLC25A24 (1p13.3) / NBPF6 (1p13.3)SLC25A24 (1p13.3) / NYAP2 (2q36.3)SLC25A24 (1p13.3) / SEC11C (18q21.32)
SLC25A24 (1p13.3) / SFTPB (2p11.2)FAM102B 1p13.3 / SLC25A24 1p13.3SLC25A24 1p13.3 / DHRS12 13q14.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A24   20662
Cards
Entrez_Gene (NCBI)SLC25A24  29957  solute carrier family 25 member 24
AliasesAPC1; SCAMC-1
GeneCards (Weizmann)SLC25A24
Ensembl hg19 (Hinxton)ENSG00000085491 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085491 [Gene_View]  chr1:108134722-108200358 [Contig_View]  SLC25A24 [Vega]
ICGC DataPortalENSG00000085491
TCGA cBioPortalSLC25A24
AceView (NCBI)SLC25A24
Genatlas (Paris)SLC25A24
WikiGenes29957
SOURCE (Princeton)SLC25A24
Genetics Home Reference (NIH)SLC25A24
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A24  -     chr1:108134722-108200358 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A24  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC25A24 - 1p13.3 [CytoView hg19]  SLC25A24 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBISLC25A24 [Mapview hg19]  SLC25A24 [Mapview hg38]
OMIM608744   
Gene and transcription
Genbank (Entrez)AF123303 AJ619961 AJ619987 AK292567 AK304165
RefSeq transcript (Entrez)NM_013386 NM_213651
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A24
Cluster EST : UnigeneHs.656870 [ NCBI ]
CGAP (NCI)Hs.656870
Alternative Splicing GalleryENSG00000085491
Gene ExpressionSLC25A24 [ NCBI-GEO ]   SLC25A24 [ EBI - ARRAY_EXPRESS ]   SLC25A24 [ SEEK ]   SLC25A24 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29957
GTEX Portal (Tissue expression)SLC25A24
Human Protein AtlasENSG00000085491-SLC25A24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUK1
Splice isoforms : SwissVarQ6NUK1
PhosPhoSitePlusQ6NUK1
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    SOLCAR (PS50920)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Graves_DC    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam13499    pfam00153   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)SLC25A24
DMDM Disease mutations29957
Blocks (Seattle)SLC25A24
PDB (SRS)4N5X    4ZCU    4ZCV   
PDB (PDBSum)4N5X    4ZCU    4ZCV   
PDB (IMB)4N5X    4ZCU    4ZCV   
PDB (RSDB)4N5X    4ZCU    4ZCV   
Structural Biology KnowledgeBase4N5X    4ZCU    4ZCV   
SCOP (Structural Classification of Proteins)4N5X    4ZCU    4ZCV   
CATH (Classification of proteins structures)4N5X    4ZCU    4ZCV   
SuperfamilyQ6NUK1
Human Protein Atlas [tissue]ENSG00000085491-SLC25A24 [tissue]
Peptide AtlasQ6NUK1
HPRD12290
IPIIPI00337494   IPI00412742   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUK1
IntAct (EBI)Q6NUK1
FunCoupENSG00000085491
BioGRIDSLC25A24
STRING (EMBL)SLC25A24
ZODIACSLC25A24
Ontologies - Pathways
QuickGOQ6NUK1
Ontology : AmiGOATP transmembrane transporter activity  calcium ion binding  mitochondrion  mitochondrial inner membrane  mitochondrial transport  regulation of cell death  ADP transmembrane transporter activity  ADP transport  ATP transport  integral component of membrane  cellular response to oxidative stress  transmembrane transport  cellular response to calcium ion  
Ontology : EGO-EBIATP transmembrane transporter activity  calcium ion binding  mitochondrion  mitochondrial inner membrane  mitochondrial transport  regulation of cell death  ADP transmembrane transporter activity  ADP transport  ATP transport  integral component of membrane  cellular response to oxidative stress  transmembrane transport  cellular response to calcium ion  
NDEx NetworkSLC25A24
Atlas of Cancer Signalling NetworkSLC25A24
Wikipedia pathwaysSLC25A24
Orthology - Evolution
OrthoDB29957
GeneTree (enSembl)ENSG00000085491
Phylogenetic Trees/Animal Genes : TreeFamSLC25A24
HOVERGENQ6NUK1
HOGENOMQ6NUK1
Homologs : HomoloGeneSLC25A24
Homology/Alignments : Family Browser (UCSC)SLC25A24
Gene fusions - Rearrangements
Fusion : MitelmanFAM102B/SLC25A24 [1p13.3/1p13.3]  [t(1;1)(p13;p13)]  
Fusion : MitelmanSLC25A24/DHRS12 [1p13.3/13q14.3]  [t(1;13)(p13;q14)]  
Fusion : MitelmanSLC25A24/NBPF6 [1p13.3/1p13.3]  [t(1;1)(p13;p13)]  
Fusion: TCGA_MDACCFAM102B 1p13.3 SLC25A24 1p13.3 BLCA
Fusion: TCGA_MDACCSLC25A24 1p13.3 DHRS12 13q14.3 BRCA
Tumor Fusion PortalSLC25A24
Fusion Cancer (Beijing)SLC25A24 [1p13.3]  -  SFTPB [2p11.2]  [FUSC003669]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A24
dbVarSLC25A24
ClinVarSLC25A24
1000_GenomesSLC25A24 
Exome Variant ServerSLC25A24
ExAC (Exome Aggregation Consortium)ENSG00000085491
GNOMAD BrowserENSG00000085491
Genetic variants : HAPMAP29957
Genomic Variants (DGV)SLC25A24 [DGVbeta]
DECIPHERSLC25A24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A24 
Mutations
ICGC Data PortalSLC25A24 
TCGA Data PortalSLC25A24 
Broad Tumor PortalSLC25A24
OASIS PortalSLC25A24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A24
DgiDB (Drug Gene Interaction Database)SLC25A24
DoCM (Curated mutations)SLC25A24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A24 (select a term)
intoGenSLC25A24
Cancer3DSLC25A24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608744   
Orphanet
DisGeNETSLC25A24
MedgenSLC25A24
Genetic Testing Registry SLC25A24
NextProtQ6NUK1 [Medical]
TSGene29957
GENETestsSLC25A24
Target ValidationSLC25A24
Huge Navigator SLC25A24 [HugePedia]
snp3D : Map Gene to Disease29957
BioCentury BCIQSLC25A24
ClinGenSLC25A24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29957
Chemical/Pharm GKB GenePA134978257
Clinical trialSLC25A24
Miscellaneous
canSAR (ICR)SLC25A24 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A24
EVEXSLC25A24
GoPubMedSLC25A24
iHOPSLC25A24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:34:58 CET 2017

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