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SLC25A26 (solute carrier family 25 member 26)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier; phosphate carrier), member 26
solute carrier family 25 (S-adenosylmethionine carrier), member 26
Other aliasCOXPD28
SAMC
HGNC (Hugo) SLC25A26
LocusID (NCBI) 115286
Atlas_Id 54628
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 66220742 and ends at 66378927 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRIG1 (3p14.1) / SLC25A26 (3p14.1)SCD (10q24.31) / SLC25A26 (3p14.1)SLC25A26 (3p14.1) / BGN (Xq28)
SLC25A26 (3p14.1) / FAM19A1 (3p14.1)SLC25A26 (3p14.1) / IMMT (2p11.2)SLC25A26 (3p14.1) / NAA25 (12q24.13)
SLC25A26 (3p14.1) / RNF220 (1p34.1)SLC25A26 3p14.1 / FAM19A1 3p14.1SLC25A26 3p14.1 / IMMT 2p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A26   20661
Cards
Entrez_Gene (NCBI)SLC25A26  115286  solute carrier family 25 member 26
AliasesCOXPD28; SAMC
GeneCards (Weizmann)SLC25A26
Ensembl hg19 (Hinxton)ENSG00000144741 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144741 [Gene_View]  chr3:66220742-66378927 [Contig_View]  SLC25A26 [Vega]
ICGC DataPortalENSG00000144741
TCGA cBioPortalSLC25A26
AceView (NCBI)SLC25A26
Genatlas (Paris)SLC25A26
WikiGenes115286
SOURCE (Princeton)SLC25A26
Genetics Home Reference (NIH)SLC25A26
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A26  -     chr3:66220742-66378927 +  3p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A26  -     3p14.1   [Description]    (hg19-Feb_2009)
EnsemblSLC25A26 - 3p14.1 [CytoView hg19]  SLC25A26 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBISLC25A26 [Mapview hg19]  SLC25A26 [Mapview hg38]
OMIM611037   616794   
Gene and transcription
Genbank (Entrez)AJ580932 AK092495 AK096876 AK291873 AX747571
RefSeq transcript (Entrez)NM_001009938 NM_001164796 NM_173471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A26
Cluster EST : UnigeneHs.379386 [ NCBI ]
CGAP (NCI)Hs.379386
Alternative Splicing GalleryENSG00000144741
Gene ExpressionSLC25A26 [ NCBI-GEO ]   SLC25A26 [ EBI - ARRAY_EXPRESS ]   SLC25A26 [ SEEK ]   SLC25A26 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115286
GTEX Portal (Tissue expression)SLC25A26
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70HW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70HW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70HW3
Splice isoforms : SwissVarQ70HW3
PhosPhoSitePlusQ70HW3
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A26
DMDM Disease mutations115286
Blocks (Seattle)SLC25A26
SuperfamilyQ70HW3
Human Protein AtlasENSG00000144741
Peptide AtlasQ70HW3
HPRD15357
IPIIPI00465034   IPI00549230   IPI00883595   IPI00552218   IPI01025385   IPI00853480   
Protein Interaction databases
DIP (DOE-UCLA)Q70HW3
IntAct (EBI)Q70HW3
FunCoupENSG00000144741
BioGRIDSLC25A26
STRING (EMBL)SLC25A26
ZODIACSLC25A26
Ontologies - Pathways
QuickGOQ70HW3
Ontology : AmiGOS-adenosyl-L-methionine transmembrane transporter activity  S-adenosyl-L-methionine transmembrane transporter activity  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  ion transport  mitochondrial transport  S-adenosyl-L-methionine transport  integral component of membrane  S-adenosyl-L-methionine transmembrane transport  
Ontology : EGO-EBIS-adenosyl-L-methionine transmembrane transporter activity  S-adenosyl-L-methionine transmembrane transporter activity  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  ion transport  mitochondrial transport  S-adenosyl-L-methionine transport  integral component of membrane  S-adenosyl-L-methionine transmembrane transport  
NDEx NetworkSLC25A26
Atlas of Cancer Signalling NetworkSLC25A26
Wikipedia pathwaysSLC25A26
Orthology - Evolution
OrthoDB115286
GeneTree (enSembl)ENSG00000144741
Phylogenetic Trees/Animal Genes : TreeFamSLC25A26
HOVERGENQ70HW3
HOGENOMQ70HW3
Homologs : HomoloGeneSLC25A26
Homology/Alignments : Family Browser (UCSC)SLC25A26
Gene fusions - Rearrangements
Fusion : MitelmanLRIG1/SLC25A26 [3p14.1/3p14.1]  [inv(3)(p14p14)]  
Fusion : MitelmanSLC25A26/FAM19A1 [3p14.1/3p14.1]  [t(3;3)(p14;p14)]  
Fusion : MitelmanSLC25A26/IMMT [3p14.1/2p11.2]  [t(2;3)(p11;p14)]  
Fusion: TCGASLC25A26 3p14.1 FAM19A1 3p14.1 KIRC
Fusion: TCGASLC25A26 3p14.1 IMMT 2p11.2 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A26
dbVarSLC25A26
ClinVarSLC25A26
1000_GenomesSLC25A26 
Exome Variant ServerSLC25A26
ExAC (Exome Aggregation Consortium)SLC25A26 (select the gene name)
Genetic variants : HAPMAP115286
Genomic Variants (DGV)SLC25A26 [DGVbeta]
DECIPHERSLC25A26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A26 
Mutations
ICGC Data PortalSLC25A26 
TCGA Data PortalSLC25A26 
Broad Tumor PortalSLC25A26
OASIS PortalSLC25A26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A26
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A26
DgiDB (Drug Gene Interaction Database)SLC25A26
DoCM (Curated mutations)SLC25A26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A26 (select a term)
intoGenSLC25A26
Cancer3DSLC25A26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611037    616794   
Orphanet
MedgenSLC25A26
Genetic Testing Registry SLC25A26
NextProtQ70HW3 [Medical]
TSGene115286
GENETestsSLC25A26
Target ValidationSLC25A26
Huge Navigator SLC25A26 [HugePedia]
snp3D : Map Gene to Disease115286
BioCentury BCIQSLC25A26
ClinGenSLC25A26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115286
Chemical/Pharm GKB GenePA134987831
Clinical trialSLC25A26
Miscellaneous
canSAR (ICR)SLC25A26 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A26
EVEXSLC25A26
GoPubMedSLC25A26
iHOPSLC25A26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:55:53 CEST 2017

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