Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A28 (solute carrier family 25 member 28)

Identity

Alias_namessolute carrier family 25, member 28
solute carrier family 25 (mitochondrial iron transporter), member 28
Alias_symbol (synonym)MRS3/4
MRS4L
Other aliasMFRN2
NPD016
HGNC (Hugo) SLC25A28
LocusID (NCBI) 81894
Atlas_Id 53212
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 101370275 and ends at 101380221 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC25A28 (10q24.2) / BRWD1 (21q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A28   23472
Cards
Entrez_Gene (NCBI)SLC25A28  81894  solute carrier family 25 member 28
AliasesMFRN2; MRS3/4; MRS4L; NPD016
GeneCards (Weizmann)SLC25A28
Ensembl hg19 (Hinxton)ENSG00000155287 [Gene_View]  chr10:101370275-101380221 [Contig_View]  SLC25A28 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155287 [Gene_View]  chr10:101370275-101380221 [Contig_View]  SLC25A28 [Vega]
ICGC DataPortalENSG00000155287
TCGA cBioPortalSLC25A28
AceView (NCBI)SLC25A28
Genatlas (Paris)SLC25A28
WikiGenes81894
SOURCE (Princeton)SLC25A28
Genetics Home Reference (NIH)SLC25A28
Genomic and cartography
GoldenPath hg19 (UCSC)SLC25A28  -     chr10:101370275-101380221 -  10q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC25A28  -     10q24.2   [Description]    (hg38-Dec_2013)
EnsemblSLC25A28 - 10q24.2 [CytoView hg19]  SLC25A28 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBISLC25A28 [Mapview hg19]  SLC25A28 [Mapview hg38]
OMIM609767   
Gene and transcription
Genbank (Entrez)AF267854 AF327402 AF327403 AJ303077 AJ303078
RefSeq transcript (Entrez)NM_031212
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)SLC25A28
Cluster EST : UnigeneHs.736801 [ NCBI ]
CGAP (NCI)Hs.736801
Alternative Splicing GalleryENSG00000155287
Gene ExpressionSLC25A28 [ NCBI-GEO ]   SLC25A28 [ EBI - ARRAY_EXPRESS ]   SLC25A28 [ SEEK ]   SLC25A28 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81894
GTEX Portal (Tissue expression)SLC25A28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A46
Splice isoforms : SwissVarQ96A46
PhosPhoSitePlusQ96A46
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A28
DMDM Disease mutations81894
Blocks (Seattle)SLC25A28
SuperfamilyQ96A46
Human Protein AtlasENSG00000155287
Peptide AtlasQ96A46
IPIIPI00640258   IPI00465180   IPI00749409   
Protein Interaction databases
DIP (DOE-UCLA)Q96A46
IntAct (EBI)Q96A46
FunCoupENSG00000155287
BioGRIDSLC25A28
STRING (EMBL)SLC25A28
ZODIACSLC25A28
Ontologies - Pathways
QuickGOQ96A46
Ontology : AmiGOstructural constituent of ribosome  mitochondrial inner membrane  translation  ion transport  integral component of membrane  iron ion homeostasis  
Ontology : EGO-EBIstructural constituent of ribosome  mitochondrial inner membrane  translation  ion transport  integral component of membrane  iron ion homeostasis  
NDEx NetworkSLC25A28
Atlas of Cancer Signalling NetworkSLC25A28
Wikipedia pathwaysSLC25A28
Orthology - Evolution
OrthoDB81894
GeneTree (enSembl)ENSG00000155287
Phylogenetic Trees/Animal Genes : TreeFamSLC25A28
HOVERGENQ96A46
HOGENOMQ96A46
Homologs : HomoloGeneSLC25A28
Homology/Alignments : Family Browser (UCSC)SLC25A28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A28
dbVarSLC25A28
ClinVarSLC25A28
1000_GenomesSLC25A28 
Exome Variant ServerSLC25A28
ExAC (Exome Aggregation Consortium)SLC25A28 (select the gene name)
Genetic variants : HAPMAP81894
Genomic Variants (DGV)SLC25A28 [DGVbeta]
DECIPHER (Syndromes)10:101370275-101380221  ENSG00000155287
CONAN: Copy Number AnalysisSLC25A28 
Mutations
ICGC Data PortalSLC25A28 
TCGA Data PortalSLC25A28 
Broad Tumor PortalSLC25A28
OASIS PortalSLC25A28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A28
DgiDB (Drug Gene Interaction Database)SLC25A28
DoCM (Curated mutations)SLC25A28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A28 (select a term)
intoGenSLC25A28
Cancer3DSLC25A28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609767   
Orphanet
MedgenSLC25A28
Genetic Testing Registry SLC25A28
NextProtQ96A46 [Medical]
TSGene81894
GENETestsSLC25A28
Huge Navigator SLC25A28 [HugePedia]
snp3D : Map Gene to Disease81894
BioCentury BCIQSLC25A28
ClinGenSLC25A28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81894
Chemical/Pharm GKB GenePA134867966
Clinical trialSLC25A28
Miscellaneous
canSAR (ICR)SLC25A28 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A28
EVEXSLC25A28
GoPubMedSLC25A28
iHOPSLC25A28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:19:35 CEST 2017

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