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SLC25A29 (solute carrier family 25 member 29)

Identity

Alias_namesC14orf69
chromosome 14 open reading frame 69
solute carrier family 25, member 29
solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29
Alias_symbol (synonym)FLJ38975
Other aliasCACL
ORNT3
HGNC (Hugo) SLC25A29
LocusID (NCBI) 123096
Atlas_Id 73350
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 100291111 and ends at 100306547 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC25A29 (14q32.2) / STIP1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A29   20116
Cards
Entrez_Gene (NCBI)SLC25A29  123096  solute carrier family 25 member 29
AliasesC14orf69; CACL; ORNT3
GeneCards (Weizmann)SLC25A29
Ensembl hg19 (Hinxton)ENSG00000197119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197119 [Gene_View]  chr14:100291111-100306547 [Contig_View]  SLC25A29 [Vega]
ICGC DataPortalENSG00000197119
TCGA cBioPortalSLC25A29
AceView (NCBI)SLC25A29
Genatlas (Paris)SLC25A29
WikiGenes123096
SOURCE (Princeton)SLC25A29
Genetics Home Reference (NIH)SLC25A29
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A29  -     chr14:100291111-100306547 -  14q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A29  -     14q32.2   [Description]    (hg19-Feb_2009)
EnsemblSLC25A29 - 14q32.2 [CytoView hg19]  SLC25A29 - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBISLC25A29 [Mapview hg19]  SLC25A29 [Mapview hg38]
OMIM615064   
Gene and transcription
Genbank (Entrez)AK095532 AK096294 AK123821 AK172788 AK289627
RefSeq transcript (Entrez)NM_001039355 NM_001291813 NM_001291814 NM_152333
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A29
Cluster EST : UnigeneHs.578109 [ NCBI ]
CGAP (NCI)Hs.578109
Alternative Splicing GalleryENSG00000197119
Gene ExpressionSLC25A29 [ NCBI-GEO ]   SLC25A29 [ EBI - ARRAY_EXPRESS ]   SLC25A29 [ SEEK ]   SLC25A29 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123096
GTEX Portal (Tissue expression)SLC25A29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8R3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8R3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8R3
Splice isoforms : SwissVarQ8N8R3
PhosPhoSitePlusQ8N8R3
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A29
DMDM Disease mutations123096
Blocks (Seattle)SLC25A29
SuperfamilyQ8N8R3
Human Protein AtlasENSG00000197119
Peptide AtlasQ8N8R3
HPRD15360
IPIIPI00184708   IPI01011790   IPI01025406   IPI01025113   IPI01024708   IPI00879528   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8R3
IntAct (EBI)Q8N8R3
FunCoupENSG00000197119
BioGRIDSLC25A29
STRING (EMBL)SLC25A29
ZODIACSLC25A29
Ontologies - Pathways
QuickGOQ8N8R3
Ontology : AmiGOamino acid transmembrane transport  mitochondrial inner membrane  mitochondrial transport  amino acid transport  amino acid transmembrane transporter activity  acyl carnitine transmembrane transporter activity  integral component of membrane  acyl carnitine transmembrane transport  
Ontology : EGO-EBIamino acid transmembrane transport  mitochondrial inner membrane  mitochondrial transport  amino acid transport  amino acid transmembrane transporter activity  acyl carnitine transmembrane transporter activity  integral component of membrane  acyl carnitine transmembrane transport  
NDEx NetworkSLC25A29
Atlas of Cancer Signalling NetworkSLC25A29
Wikipedia pathwaysSLC25A29
Orthology - Evolution
OrthoDB123096
GeneTree (enSembl)ENSG00000197119
Phylogenetic Trees/Animal Genes : TreeFamSLC25A29
HOVERGENQ8N8R3
HOGENOMQ8N8R3
Homologs : HomoloGeneSLC25A29
Homology/Alignments : Family Browser (UCSC)SLC25A29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A29
dbVarSLC25A29
ClinVarSLC25A29
1000_GenomesSLC25A29 
Exome Variant ServerSLC25A29
ExAC (Exome Aggregation Consortium)SLC25A29 (select the gene name)
Genetic variants : HAPMAP123096
Genomic Variants (DGV)SLC25A29 [DGVbeta]
DECIPHERSLC25A29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A29 
Mutations
ICGC Data PortalSLC25A29 
TCGA Data PortalSLC25A29 
Broad Tumor PortalSLC25A29
OASIS PortalSLC25A29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A29
DgiDB (Drug Gene Interaction Database)SLC25A29
DoCM (Curated mutations)SLC25A29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A29 (select a term)
intoGenSLC25A29
Cancer3DSLC25A29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615064   
Orphanet
MedgenSLC25A29
Genetic Testing Registry SLC25A29
NextProtQ8N8R3 [Medical]
TSGene123096
GENETestsSLC25A29
Target ValidationSLC25A29
Huge Navigator SLC25A29 [HugePedia]
snp3D : Map Gene to Disease123096
BioCentury BCIQSLC25A29
ClinGenSLC25A29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123096
Chemical/Pharm GKB GenePA134980581
Clinical trialSLC25A29
Miscellaneous
canSAR (ICR)SLC25A29 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A29
EVEXSLC25A29
GoPubMedSLC25A29
iHOPSLC25A29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:04 CEST 2017

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