Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A31 (solute carrier family 25 member 31)

Identity

Alias_namessolute carrier family 25 (mitochondrial carrier
Alias_symbol (synonym)DKFZP434N1235
ANT4
Other aliasAAC4
ANT 4
SFEC35kDa
HGNC (Hugo) SLC25A31
LocusID (NCBI) 83447
Atlas_Id 54629
Location 4q28.1  [Link to chromosome band 4q28]
Location_base_pair Starts at 127730378 and ends at 127774299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABHD18 (4q28.2) / SLC25A31 (4q28.1)BMP2K (4q21.21) / SLC25A31 (4q28.1)HSPA4L (4q28.1) / SLC25A31 (4q28.1)
UGDH (4p14) / SLC25A31 (4q28.1)BMP2K 4q21.21 / SLC25A31 4q28.1C4orf29 4q28.2 / SLC25A31 4q28.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A31   25319
Cards
Entrez_Gene (NCBI)SLC25A31  83447  solute carrier family 25 member 31
AliasesAAC4; ANT; ANT4; SFEC35kDa
GeneCards (Weizmann)SLC25A31
Ensembl hg19 (Hinxton)ENSG00000151475 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151475 [Gene_View]  chr4:127730378-127774299 [Contig_View]  SLC25A31 [Vega]
ICGC DataPortalENSG00000151475
TCGA cBioPortalSLC25A31
AceView (NCBI)SLC25A31
Genatlas (Paris)SLC25A31
WikiGenes83447
SOURCE (Princeton)SLC25A31
Genetics Home Reference (NIH)SLC25A31
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A31  -     chr4:127730378-127774299 +  4q28.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A31  -     4q28.1   [Description]    (hg19-Feb_2009)
EnsemblSLC25A31 - 4q28.1 [CytoView hg19]  SLC25A31 - 4q28.1 [CytoView hg38]
Mapping of homologs : NCBISLC25A31 [Mapview hg19]  SLC25A31 [Mapview hg38]
OMIM610796   
Gene and transcription
Genbank (Entrez)AJ863129 AL136857 AM393262 AY550240 BC022032
RefSeq transcript (Entrez)NM_001318467 NM_031291
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A31
Cluster EST : UnigeneHs.149030 [ NCBI ]
CGAP (NCI)Hs.149030
Alternative Splicing GalleryENSG00000151475
Gene ExpressionSLC25A31 [ NCBI-GEO ]   SLC25A31 [ EBI - ARRAY_EXPRESS ]   SLC25A31 [ SEEK ]   SLC25A31 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83447
GTEX Portal (Tissue expression)SLC25A31
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0C2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0C2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0C2
Splice isoforms : SwissVarQ9H0C2
PhosPhoSitePlusQ9H0C2
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Aden_trnslctor    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A31
DMDM Disease mutations83447
Blocks (Seattle)SLC25A31
SuperfamilyQ9H0C2
Human Protein AtlasENSG00000151475
Peptide AtlasQ9H0C2
HPRD13160
IPIIPI00010420   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0C2
IntAct (EBI)Q9H0C2
FunCoupENSG00000151475
BioGRIDSLC25A31
STRING (EMBL)SLC25A31
ZODIACSLC25A31
Ontologies - Pathways
QuickGOQ9H0C2
Ontology : AmiGOnucleus  mitochondrion  mitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  motile cilium  transmembrane transport  
Ontology : EGO-EBInucleus  mitochondrion  mitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  motile cilium  transmembrane transport  
Pathways : KEGGCalcium signaling pathway    Parkinson's disease    Huntington's disease    HTLV-I infection   
NDEx NetworkSLC25A31
Atlas of Cancer Signalling NetworkSLC25A31
Wikipedia pathwaysSLC25A31
Orthology - Evolution
OrthoDB83447
GeneTree (enSembl)ENSG00000151475
Phylogenetic Trees/Animal Genes : TreeFamSLC25A31
HOVERGENQ9H0C2
HOGENOMQ9H0C2
Homologs : HomoloGeneSLC25A31
Homology/Alignments : Family Browser (UCSC)SLC25A31
Gene fusions - Rearrangements
Fusion : MitelmanBMP2K/SLC25A31 [4q21.21/4q28.1]  [t(4;4)(q21;q28)]  
Fusion : MitelmanC4orf29/SLC25A31 [4q28.2/4q28.1]  [t(4;4)(q28;q28)]  
Fusion : MitelmanUGDH/SLC25A31 [4p14/4q28.1]  [t(4;4)(p14;q28)]  
Fusion: TCGABMP2K 4q21.21 SLC25A31 4q28.1 LUAD
Fusion: TCGAC4orf29 4q28.2 SLC25A31 4q28.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A31
dbVarSLC25A31
ClinVarSLC25A31
1000_GenomesSLC25A31 
Exome Variant ServerSLC25A31
ExAC (Exome Aggregation Consortium)SLC25A31 (select the gene name)
Genetic variants : HAPMAP83447
Genomic Variants (DGV)SLC25A31 [DGVbeta]
DECIPHERSLC25A31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A31 
Mutations
ICGC Data PortalSLC25A31 
TCGA Data PortalSLC25A31 
Broad Tumor PortalSLC25A31
OASIS PortalSLC25A31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A31
DgiDB (Drug Gene Interaction Database)SLC25A31
DoCM (Curated mutations)SLC25A31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A31 (select a term)
intoGenSLC25A31
Cancer3DSLC25A31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610796   
Orphanet
MedgenSLC25A31
Genetic Testing Registry SLC25A31
NextProtQ9H0C2 [Medical]
TSGene83447
GENETestsSLC25A31
Target ValidationSLC25A31
Huge Navigator SLC25A31 [HugePedia]
snp3D : Map Gene to Disease83447
BioCentury BCIQSLC25A31
ClinGenSLC25A31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83447
Chemical/Pharm GKB GenePA142670904
Clinical trialSLC25A31
Miscellaneous
canSAR (ICR)SLC25A31 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A31
EVEXSLC25A31
GoPubMedSLC25A31
iHOPSLC25A31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:14:43 CEST 2017

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