Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A32 (solute carrier family 25 member 32)

Identity

Alias_namessolute carrier family 25, member 32
solute carrier family 25 (mitochondrial folate carrier), member 32
Alias_symbol (synonym)MFTC
Other aliasMFT
RREI
HGNC (Hugo) SLC25A32
LocusID (NCBI) 81034
Atlas_Id 54630
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 103398638 and ends at 103415335 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PANK3 (5q34) / SLC25A32 (8q22.3)SLC25A32 (8q22.3) / LIG1 (19q13.33)TRIB1 (8q24.13) / SLC25A32 (8q22.3)
UBR5 (8q22.3) / SLC25A32 (8q22.3)TRIB1 8q24.13 / SLC25A32 8q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A32   29683
Cards
Entrez_Gene (NCBI)SLC25A32  81034  solute carrier family 25 member 32
AliasesMFT; MFTC; RREI
GeneCards (Weizmann)SLC25A32
Ensembl hg19 (Hinxton)ENSG00000164933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164933 [Gene_View]  chr8:103398638-103415335 [Contig_View]  SLC25A32 [Vega]
ICGC DataPortalENSG00000164933
TCGA cBioPortalSLC25A32
AceView (NCBI)SLC25A32
Genatlas (Paris)SLC25A32
WikiGenes81034
SOURCE (Princeton)SLC25A32
Genetics Home Reference (NIH)SLC25A32
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A32  -     chr8:103398638-103415335 -  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A32  -     8q22.3   [Description]    (hg19-Feb_2009)
EnsemblSLC25A32 - 8q22.3 [CytoView hg19]  SLC25A32 - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBISLC25A32 [Mapview hg19]  SLC25A32 [Mapview hg38]
OMIM610815   616839   
Gene and transcription
Genbank (Entrez)AF283645 AK027531 AK027787 AK074452 AK125492
RefSeq transcript (Entrez)NM_030780
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A32
Cluster EST : UnigeneHs.607819 [ NCBI ]
CGAP (NCI)Hs.607819
Alternative Splicing GalleryENSG00000164933
Gene ExpressionSLC25A32 [ NCBI-GEO ]   SLC25A32 [ EBI - ARRAY_EXPRESS ]   SLC25A32 [ SEEK ]   SLC25A32 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81034
GTEX Portal (Tissue expression)SLC25A32
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2D1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2D1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2D1
Splice isoforms : SwissVarQ9H2D1
PhosPhoSitePlusQ9H2D1
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_uncoupling    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A32
DMDM Disease mutations81034
Blocks (Seattle)SLC25A32
SuperfamilyQ9H2D1
Human Protein AtlasENSG00000164933
Peptide AtlasQ9H2D1
HPRD11301
IPIIPI00300886   IPI01015039   IPI01015434   IPI00973954   IPI01010726   IPI00793463   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2D1
IntAct (EBI)Q9H2D1
FunCoupENSG00000164933
BioGRIDSLC25A32
STRING (EMBL)SLC25A32
ZODIACSLC25A32
Ontologies - Pathways
QuickGOQ9H2D1
Ontology : AmiGOmitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  mitochondrial inner membrane  glycine metabolic process  glycine metabolic process  mitochondrial transport  folic acid transporter activity  folic acid transporter activity  folic acid transporter activity  folic acid transporter activity  FAD transmembrane transporter activity  folic acid transport  integral component of membrane  FAD transmembrane transport  folic acid metabolic process  folic acid import into mitochondrion  
Ontology : EGO-EBImitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  mitochondrial inner membrane  glycine metabolic process  glycine metabolic process  mitochondrial transport  folic acid transporter activity  folic acid transporter activity  folic acid transporter activity  folic acid transporter activity  FAD transmembrane transporter activity  folic acid transport  integral component of membrane  FAD transmembrane transport  folic acid metabolic process  folic acid import into mitochondrion  
NDEx NetworkSLC25A32
Atlas of Cancer Signalling NetworkSLC25A32
Wikipedia pathwaysSLC25A32
Orthology - Evolution
OrthoDB81034
GeneTree (enSembl)ENSG00000164933
Phylogenetic Trees/Animal Genes : TreeFamSLC25A32
HOVERGENQ9H2D1
HOGENOMQ9H2D1
Homologs : HomoloGeneSLC25A32
Homology/Alignments : Family Browser (UCSC)SLC25A32
Gene fusions - Rearrangements
Fusion : MitelmanTRIB1/SLC25A32 [8q24.13/8q22.3]  [t(8;8)(q22;q24)]  
Fusion : MitelmanUBR5/SLC25A32 [8q22.3/8q22.3]  [t(8;8)(q22;q22)]  
Fusion: TCGATRIB1 8q24.13 SLC25A32 8q22.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A32
dbVarSLC25A32
ClinVarSLC25A32
1000_GenomesSLC25A32 
Exome Variant ServerSLC25A32
ExAC (Exome Aggregation Consortium)SLC25A32 (select the gene name)
Genetic variants : HAPMAP81034
Genomic Variants (DGV)SLC25A32 [DGVbeta]
DECIPHERSLC25A32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A32 
Mutations
ICGC Data PortalSLC25A32 
TCGA Data PortalSLC25A32 
Broad Tumor PortalSLC25A32
OASIS PortalSLC25A32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A32
DgiDB (Drug Gene Interaction Database)SLC25A32
DoCM (Curated mutations)SLC25A32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A32 (select a term)
intoGenSLC25A32
Cancer3DSLC25A32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610815    616839   
Orphanet
MedgenSLC25A32
Genetic Testing Registry SLC25A32
NextProtQ9H2D1 [Medical]
TSGene81034
GENETestsSLC25A32
Huge Navigator SLC25A32 [HugePedia]
snp3D : Map Gene to Disease81034
BioCentury BCIQSLC25A32
ClinGenSLC25A32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81034
Chemical/Pharm GKB GenePA142670905
Clinical trialSLC25A32
Miscellaneous
canSAR (ICR)SLC25A32 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A32
EVEXSLC25A32
GoPubMedSLC25A32
iHOPSLC25A32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:37:33 CEST 2017

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