Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A33 (solute carrier family 25 member 33)

Identity

Alias_namessolute carrier family 25, member 33
solute carrier family 25 (pyrimidine nucleotide carrier), member 33
Alias_symbol (synonym)MGC4399
BMSC-MCP
PNC1
Other alias
HGNC (Hugo) SLC25A33
LocusID (NCBI) 84275
Atlas_Id 56228
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 9539469 and ends at 9582773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARSD (Xp22.33) / SLC25A33 (1p36.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A33   29681
Cards
Entrez_Gene (NCBI)SLC25A33  84275  solute carrier family 25 member 33
AliasesBMSC-MCP; PNC1
GeneCards (Weizmann)SLC25A33
Ensembl hg19 (Hinxton)ENSG00000171612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171612 [Gene_View]  chr1:9539469-9582773 [Contig_View]  SLC25A33 [Vega]
ICGC DataPortalENSG00000171612
TCGA cBioPortalSLC25A33
AceView (NCBI)SLC25A33
Genatlas (Paris)SLC25A33
WikiGenes84275
SOURCE (Princeton)SLC25A33
Genetics Home Reference (NIH)SLC25A33
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A33  -     chr1:9539469-9582773 +  1p36.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A33  -     1p36.22   [Description]    (hg19-Feb_2009)
EnsemblSLC25A33 - 1p36.22 [CytoView hg19]  SLC25A33 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBISLC25A33 [Mapview hg19]  SLC25A33 [Mapview hg38]
OMIM610816   
Gene and transcription
Genbank (Entrez)AF495714 AJ880283 BC004991 BC073135
RefSeq transcript (Entrez)NM_032315
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A33
Cluster EST : UnigeneHs.568613 [ NCBI ]
CGAP (NCI)Hs.568613
Alternative Splicing GalleryENSG00000171612
Gene ExpressionSLC25A33 [ NCBI-GEO ]   SLC25A33 [ EBI - ARRAY_EXPRESS ]   SLC25A33 [ SEEK ]   SLC25A33 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84275
GTEX Portal (Tissue expression)SLC25A33
Human Protein AtlasENSG00000171612-SLC25A33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSK2
Splice isoforms : SwissVarQ9BSK2
PhosPhoSitePlusQ9BSK2
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A33
DMDM Disease mutations84275
Blocks (Seattle)SLC25A33
SuperfamilyQ9BSK2
Human Protein Atlas [tissue]ENSG00000171612-SLC25A33 [tissue]
Peptide AtlasQ9BSK2
HPRD14631
IPIIPI00031133   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSK2
IntAct (EBI)Q9BSK2
FunCoupENSG00000171612
BioGRIDSLC25A33
STRING (EMBL)SLC25A33
ZODIACSLC25A33
Ontologies - Pathways
QuickGOQ9BSK2
Ontology : AmiGOmitochondrial genome maintenance  regulation of oxidative phosphorylation  mitochondrial inner membrane  mitochondrial DNA replication  transcription from mitochondrial promoter  pyrimidine nucleotide transport  mitochondrion organization  mitochondrion organization  positive regulation of cell proliferation  pyrimidine nucleotide transmembrane transporter activity  integral component of membrane  positive regulation of cell growth  positive regulation of cell growth  mitochondria-nucleus signaling pathway  mitochondrial membrane  cellular response to insulin stimulus  mitochondrial respiratory chain complex III assembly  regulation of mitochondrial membrane potential  regulation of cell cycle arrest  regulation of reactive oxygen species biosynthetic process  cellular response to insulin-like growth factor stimulus  mitochondrial pyrimidine nucleotide import  mitochondrial pyrimidine nucleotide import  
Ontology : EGO-EBImitochondrial genome maintenance  regulation of oxidative phosphorylation  mitochondrial inner membrane  mitochondrial DNA replication  transcription from mitochondrial promoter  pyrimidine nucleotide transport  mitochondrion organization  mitochondrion organization  positive regulation of cell proliferation  pyrimidine nucleotide transmembrane transporter activity  integral component of membrane  positive regulation of cell growth  positive regulation of cell growth  mitochondria-nucleus signaling pathway  mitochondrial membrane  cellular response to insulin stimulus  mitochondrial respiratory chain complex III assembly  regulation of mitochondrial membrane potential  regulation of cell cycle arrest  regulation of reactive oxygen species biosynthetic process  cellular response to insulin-like growth factor stimulus  mitochondrial pyrimidine nucleotide import  mitochondrial pyrimidine nucleotide import  
NDEx NetworkSLC25A33
Atlas of Cancer Signalling NetworkSLC25A33
Wikipedia pathwaysSLC25A33
Orthology - Evolution
OrthoDB84275
GeneTree (enSembl)ENSG00000171612
Phylogenetic Trees/Animal Genes : TreeFamSLC25A33
HOVERGENQ9BSK2
HOGENOMQ9BSK2
Homologs : HomoloGeneSLC25A33
Homology/Alignments : Family Browser (UCSC)SLC25A33
Gene fusions - Rearrangements
Tumor Fusion PortalSLC25A33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A33
dbVarSLC25A33
ClinVarSLC25A33
1000_GenomesSLC25A33 
Exome Variant ServerSLC25A33
ExAC (Exome Aggregation Consortium)ENSG00000171612
GNOMAD BrowserENSG00000171612
Genetic variants : HAPMAP84275
Genomic Variants (DGV)SLC25A33 [DGVbeta]
DECIPHERSLC25A33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A33 
Mutations
ICGC Data PortalSLC25A33 
TCGA Data PortalSLC25A33 
Broad Tumor PortalSLC25A33
OASIS PortalSLC25A33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A33
DgiDB (Drug Gene Interaction Database)SLC25A33
DoCM (Curated mutations)SLC25A33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A33 (select a term)
intoGenSLC25A33
Cancer3DSLC25A33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610816   
Orphanet
DisGeNETSLC25A33
MedgenSLC25A33
Genetic Testing Registry SLC25A33
NextProtQ9BSK2 [Medical]
TSGene84275
GENETestsSLC25A33
Target ValidationSLC25A33
Huge Navigator SLC25A33 [HugePedia]
snp3D : Map Gene to Disease84275
BioCentury BCIQSLC25A33
ClinGenSLC25A33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84275
Chemical/Pharm GKB GenePA162403588
Clinical trialSLC25A33
Miscellaneous
canSAR (ICR)SLC25A33 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A33
EVEXSLC25A33
GoPubMedSLC25A33
iHOPSLC25A33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:35:00 CET 2017

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