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SLC25A36 (solute carrier family 25 member 36)

Identity

Alias_namessolute carrier family 25, member 36
solute carrier family 25 (pyrimidine nucleotide carrier), member 36
Alias_symbol (synonym)FLJ10618
PNC2
Other alias
HGNC (Hugo) SLC25A36
LocusID (NCBI) 55186
Atlas_Id 54631
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 140941820 and ends at 140979943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RAB35 (12q24.23) / SLC25A36 (3q23)SLC25A36 (3q23) / IFRD1 (7q31.1)SLC25A36 (3q23) / PEX5L (3q26.33)
SLC25A36 (3q23) / SLC25A36 (3q23)SLC25A36 3q23 / PEX5L 3q26.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Small Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)SLC25A36   25554
Cards
Entrez_Gene (NCBI)SLC25A36  55186  solute carrier family 25 member 36
AliasesPNC2
GeneCards (Weizmann)SLC25A36
Ensembl hg19 (Hinxton)ENSG00000114120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114120 [Gene_View]  chr3:140941820-140979943 [Contig_View]  SLC25A36 [Vega]
ICGC DataPortalENSG00000114120
TCGA cBioPortalSLC25A36
AceView (NCBI)SLC25A36
Genatlas (Paris)SLC25A36
WikiGenes55186
SOURCE (Princeton)SLC25A36
Genetics Home Reference (NIH)SLC25A36
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A36  -     chr3:140941820-140979943 +  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A36  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblSLC25A36 - 3q23 [CytoView hg19]  SLC25A36 - 3q23 [CytoView hg38]
Mapping of homologs : NCBISLC25A36 [Mapview hg19]  SLC25A36 [Mapview hg38]
OMIM616149   
Gene and transcription
Genbank (Entrez)AK001480 AK296785 AL049246 AL136803 BC014064
RefSeq transcript (Entrez)NM_001104647 NM_018155
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A36
Cluster EST : UnigeneHs.144130 [ NCBI ]
CGAP (NCI)Hs.144130
Alternative Splicing GalleryENSG00000114120
Gene ExpressionSLC25A36 [ NCBI-GEO ]   SLC25A36 [ EBI - ARRAY_EXPRESS ]   SLC25A36 [ SEEK ]   SLC25A36 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55186
GTEX Portal (Tissue expression)SLC25A36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96CQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96CQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96CQ1
Splice isoforms : SwissVarQ96CQ1
PhosPhoSitePlusQ96CQ1
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A36
DMDM Disease mutations55186
Blocks (Seattle)SLC25A36
SuperfamilyQ96CQ1
Human Protein AtlasENSG00000114120
Peptide AtlasQ96CQ1
HPRD07688
IPIIPI00301303   IPI00795271   IPI00848033   IPI00979781   IPI00798148   IPI00942089   IPI00795986   IPI00963975   
Protein Interaction databases
DIP (DOE-UCLA)Q96CQ1
IntAct (EBI)Q96CQ1
FunCoupENSG00000114120
BioGRIDSLC25A36
STRING (EMBL)SLC25A36
ZODIACSLC25A36
Ontologies - Pathways
QuickGOQ96CQ1
Ontology : AmiGOmitochondrial genome maintenance  mitochondrion  mitochondrial inner membrane  pyrimidine nucleotide transport  mitochondrion organization  pyrimidine nucleotide transmembrane transporter activity  integral component of membrane  regulation of mitochondrial membrane potential  mitochondrial pyrimidine nucleotide import  
Ontology : EGO-EBImitochondrial genome maintenance  mitochondrion  mitochondrial inner membrane  pyrimidine nucleotide transport  mitochondrion organization  pyrimidine nucleotide transmembrane transporter activity  integral component of membrane  regulation of mitochondrial membrane potential  mitochondrial pyrimidine nucleotide import  
NDEx NetworkSLC25A36
Atlas of Cancer Signalling NetworkSLC25A36
Wikipedia pathwaysSLC25A36
Orthology - Evolution
OrthoDB55186
GeneTree (enSembl)ENSG00000114120
Phylogenetic Trees/Animal Genes : TreeFamSLC25A36
HOVERGENQ96CQ1
HOGENOMQ96CQ1
Homologs : HomoloGeneSLC25A36
Homology/Alignments : Family Browser (UCSC)SLC25A36
Gene fusions - Rearrangements
Fusion : MitelmanSLC25A36/PEX5L [3q23/3q26.33]  
Fusion: TCGASLC25A36 3q23 PEX5L 3q26.33 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A36
dbVarSLC25A36
ClinVarSLC25A36
1000_GenomesSLC25A36 
Exome Variant ServerSLC25A36
ExAC (Exome Aggregation Consortium)SLC25A36 (select the gene name)
Genetic variants : HAPMAP55186
Genomic Variants (DGV)SLC25A36 [DGVbeta]
DECIPHERSLC25A36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A36 
Mutations
ICGC Data PortalSLC25A36 
TCGA Data PortalSLC25A36 
Broad Tumor PortalSLC25A36
OASIS PortalSLC25A36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A36
DgiDB (Drug Gene Interaction Database)SLC25A36
DoCM (Curated mutations)SLC25A36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A36 (select a term)
intoGenSLC25A36
Cancer3DSLC25A36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616149   
Orphanet
MedgenSLC25A36
Genetic Testing Registry SLC25A36
NextProtQ96CQ1 [Medical]
TSGene55186
GENETestsSLC25A36
Huge Navigator SLC25A36 [HugePedia]
snp3D : Map Gene to Disease55186
BioCentury BCIQSLC25A36
ClinGenSLC25A36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55186
Chemical/Pharm GKB GenePA142670908
Clinical trialSLC25A36
Miscellaneous
canSAR (ICR)SLC25A36 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A36
EVEXSLC25A36
GoPubMedSLC25A36
iHOPSLC25A36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:37:33 CEST 2017

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