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SLC25A37 (solute carrier family 25 member 37)

Identity

Alias_namessolute carrier family 25, member 37
solute carrier family 25 (mitochondrial iron transporter), member 37
Alias_symbol (synonym)MSCP
MFRN
MFRN1
Other aliasHT015
MSC
PRO1278
PRO1584
PRO2217
HGNC (Hugo) SLC25A37
LocusID (NCBI) 51312
Atlas_Id 73357
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 23528795 and ends at 23575463 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC25A37 (8p21.2) / ELF1 (13q14.11)SLC25A37 (8p21.2) / MLF2 (12p13.31)ZFAND3 (6p21.2) / SLC25A37 (8p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A37   29786
Cards
Entrez_Gene (NCBI)SLC25A37  51312  solute carrier family 25 member 37
AliasesHT015; MFRN; MFRN1; MSC; 
MSCP; PRO1278; PRO1584; PRO2217
GeneCards (Weizmann)SLC25A37
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:23528795-23575463 [Contig_View]  SLC25A37 [Vega]
TCGA cBioPortalSLC25A37
AceView (NCBI)SLC25A37
Genatlas (Paris)SLC25A37
WikiGenes51312
SOURCE (Princeton)SLC25A37
Genetics Home Reference (NIH)SLC25A37
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A37  -     chr8:23528795-23575463 +  8p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A37  -     8p21.2   [Description]    (hg19-Feb_2009)
EnsemblSLC25A37 - 8p21.2 [CytoView hg19]  SLC25A37 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBISLC25A37 [Mapview hg19]  SLC25A37 [Mapview hg38]
OMIM610387   
Gene and transcription
Genbank (Entrez)AF113696 AF116630 AF116640 AF155660 AF223466
RefSeq transcript (Entrez)NM_001317812 NM_001317813 NM_001317814 NM_016612
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A37
Cluster EST : UnigeneHs.726050 [ NCBI ]
CGAP (NCI)Hs.726050
Gene ExpressionSLC25A37 [ NCBI-GEO ]   SLC25A37 [ EBI - ARRAY_EXPRESS ]   SLC25A37 [ SEEK ]   SLC25A37 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51312
GTEX Portal (Tissue expression)SLC25A37
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYZ2
Splice isoforms : SwissVarQ9NYZ2
PhosPhoSitePlusQ9NYZ2
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A37
DMDM Disease mutations51312
Blocks (Seattle)SLC25A37
SuperfamilyQ9NYZ2
Peptide AtlasQ9NYZ2
HPRD17605
IPIIPI00746590   IPI00748111   IPI00743720   IPI00401210   IPI00385230   IPI00383369   IPI00976357   IPI00642860   IPI00973060   IPI00979988   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYZ2
IntAct (EBI)Q9NYZ2
BioGRIDSLC25A37
STRING (EMBL)SLC25A37
ZODIACSLC25A37
Ontologies - Pathways
QuickGOQ9NYZ2
Ontology : AmiGOiron ion transmembrane transporter activity  mitochondrial inner membrane  integral component of membrane  iron ion transmembrane transport  mitochondrial iron ion transport  iron ion homeostasis  
Ontology : EGO-EBIiron ion transmembrane transporter activity  mitochondrial inner membrane  integral component of membrane  iron ion transmembrane transport  mitochondrial iron ion transport  iron ion homeostasis  
NDEx NetworkSLC25A37
Atlas of Cancer Signalling NetworkSLC25A37
Wikipedia pathwaysSLC25A37
Orthology - Evolution
OrthoDB51312
Phylogenetic Trees/Animal Genes : TreeFamSLC25A37
HOVERGENQ9NYZ2
HOGENOMQ9NYZ2
Homologs : HomoloGeneSLC25A37
Homology/Alignments : Family Browser (UCSC)SLC25A37
Gene fusions - Rearrangements
Tumor Fusion PortalSLC25A37
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A37
dbVarSLC25A37
ClinVarSLC25A37
1000_GenomesSLC25A37 
Exome Variant ServerSLC25A37
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP51312
Genomic Variants (DGV)SLC25A37 [DGVbeta]
DECIPHERSLC25A37 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A37 
Mutations
ICGC Data PortalSLC25A37 
TCGA Data PortalSLC25A37 
Broad Tumor PortalSLC25A37
OASIS PortalSLC25A37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A37  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A37
DgiDB (Drug Gene Interaction Database)SLC25A37
DoCM (Curated mutations)SLC25A37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A37 (select a term)
intoGenSLC25A37
Cancer3DSLC25A37(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610387   
Orphanet
DisGeNETSLC25A37
MedgenSLC25A37
Genetic Testing Registry SLC25A37
NextProtQ9NYZ2 [Medical]
TSGene51312
GENETestsSLC25A37
Target ValidationSLC25A37
Huge Navigator SLC25A37 [HugePedia]
snp3D : Map Gene to Disease51312
BioCentury BCIQSLC25A37
ClinGenSLC25A37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51312
Chemical/Pharm GKB GenePA142670909
Clinical trialSLC25A37
Miscellaneous
canSAR (ICR)SLC25A37 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A37
EVEXSLC25A37
GoPubMedSLC25A37
iHOPSLC25A37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:58 CET 2017

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