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SLC25A38 (solute carrier family 25 member 38)

Identity

Other aliasSIDBA2
HGNC (Hugo) SLC25A38
LocusID (NCBI) 54977
Atlas_Id 56709
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 39383324 and ends at 39397328 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC25A38 (3p22.1) / HPRT1 (Xq26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A38   26054
Cards
Entrez_Gene (NCBI)SLC25A38  54977  solute carrier family 25 member 38
AliasesSIDBA2
GeneCards (Weizmann)SLC25A38
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:39383324-39397328 [Contig_View]  SLC25A38 [Vega]
TCGA cBioPortalSLC25A38
AceView (NCBI)SLC25A38
Genatlas (Paris)SLC25A38
WikiGenes54977
SOURCE (Princeton)SLC25A38
Genetics Home Reference (NIH)SLC25A38
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A38  -     chr3:39383324-39397328 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A38  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblSLC25A38 - 3p22.1 [CytoView hg19]  SLC25A38 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBISLC25A38 [Mapview hg19]  SLC25A38 [Mapview hg38]
OMIM205950   610819   
Gene and transcription
Genbank (Entrez)AK000558 AK026356 AK225388 BC013194 BQ574159
RefSeq transcript (Entrez)NM_017875
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A38
Cluster EST : UnigeneHs.369615 [ NCBI ]
CGAP (NCI)Hs.369615
Gene ExpressionSLC25A38 [ NCBI-GEO ]   SLC25A38 [ EBI - ARRAY_EXPRESS ]   SLC25A38 [ SEEK ]   SLC25A38 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54977
GTEX Portal (Tissue expression)SLC25A38
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DW6
Splice isoforms : SwissVarQ96DW6
PhosPhoSitePlusQ96DW6
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom    SLC25A38   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A38
DMDM Disease mutations54977
Blocks (Seattle)SLC25A38
SuperfamilyQ96DW6
Peptide AtlasQ96DW6
IPIIPI00304666   IPI00927481   
Protein Interaction databases
DIP (DOE-UCLA)Q96DW6
IntAct (EBI)Q96DW6
BioGRIDSLC25A38
STRING (EMBL)SLC25A38
ZODIACSLC25A38
Ontologies - Pathways
QuickGOQ96DW6
Ontology : AmiGOmitochondrial inner membrane  heme biosynthetic process  mitochondrial transport  glycine transmembrane transporter activity  integral component of membrane  erythrocyte differentiation  glycine import  
Ontology : EGO-EBImitochondrial inner membrane  heme biosynthetic process  mitochondrial transport  glycine transmembrane transporter activity  integral component of membrane  erythrocyte differentiation  glycine import  
NDEx NetworkSLC25A38
Atlas of Cancer Signalling NetworkSLC25A38
Wikipedia pathwaysSLC25A38
Orthology - Evolution
OrthoDB54977
Phylogenetic Trees/Animal Genes : TreeFamSLC25A38
HOVERGENQ96DW6
HOGENOMQ96DW6
Homologs : HomoloGeneSLC25A38
Homology/Alignments : Family Browser (UCSC)SLC25A38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A38
dbVarSLC25A38
ClinVarSLC25A38
1000_GenomesSLC25A38 
Exome Variant ServerSLC25A38
ExAC (Exome Aggregation Consortium)SLC25A38 (select the gene name)
Genetic variants : HAPMAP54977
Genomic Variants (DGV)SLC25A38 [DGVbeta]
DECIPHERSLC25A38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A38 
Mutations
ICGC Data PortalSLC25A38 
TCGA Data PortalSLC25A38 
Broad Tumor PortalSLC25A38
OASIS PortalSLC25A38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A38
DgiDB (Drug Gene Interaction Database)SLC25A38
DoCM (Curated mutations)SLC25A38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A38 (select a term)
intoGenSLC25A38
Cancer3DSLC25A38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM205950    610819   
Orphanet
MedgenSLC25A38
Genetic Testing Registry SLC25A38
NextProtQ96DW6 [Medical]
TSGene54977
GENETestsSLC25A38
Target ValidationSLC25A38
Huge Navigator SLC25A38 [HugePedia]
snp3D : Map Gene to Disease54977
BioCentury BCIQSLC25A38
ClinGenSLC25A38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54977
Chemical/Pharm GKB GenePA162403607
Clinical trialSLC25A38
Miscellaneous
canSAR (ICR)SLC25A38 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A38
EVEXSLC25A38
GoPubMedSLC25A38
iHOPSLC25A38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:55:54 CEST 2017

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