Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC25A39 (solute carrier family 25 member 39)

Identity

Alias_namessolute carrier family 25, member 39
Alias_symbol (synonym)FLJ22407
CGI-69
Other aliasCGI69
HGNC (Hugo) SLC25A39
LocusID (NCBI) 51629
Atlas_Id 73359
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44319625 and ends at 44324870 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NSUN2 (5p15.31) / SLC25A39 (17q21.31)SLC25A39 (17q21.31) / HOXC6 (12q13.13)SLC25A39 (17q21.31) / MRPL55 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A39   24279
Cards
Entrez_Gene (NCBI)SLC25A39  51629  solute carrier family 25 member 39
AliasesCGI-69; CGI69
GeneCards (Weizmann)SLC25A39
Ensembl hg19 (Hinxton)ENSG00000013306 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000013306 [Gene_View]  chr17:44319625-44324870 [Contig_View]  SLC25A39 [Vega]
ICGC DataPortalENSG00000013306
TCGA cBioPortalSLC25A39
AceView (NCBI)SLC25A39
Genatlas (Paris)SLC25A39
WikiGenes51629
SOURCE (Princeton)SLC25A39
Genetics Home Reference (NIH)SLC25A39
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A39  -     chr17:44319625-44324870 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A39  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblSLC25A39 - 17q21.31 [CytoView hg19]  SLC25A39 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBISLC25A39 [Mapview hg19]  SLC25A39 [Mapview hg38]
OMIM610820   
Gene and transcription
Genbank (Entrez)AB209576 AF119864 AF151827 AF317711 AK026060
RefSeq transcript (Entrez)NM_001143780 NM_001321240 NM_001321241 NM_016016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A39
Cluster EST : UnigeneHs.744880 [ NCBI ]
CGAP (NCI)Hs.744880
Alternative Splicing GalleryENSG00000013306
Gene ExpressionSLC25A39 [ NCBI-GEO ]   SLC25A39 [ EBI - ARRAY_EXPRESS ]   SLC25A39 [ SEEK ]   SLC25A39 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A39 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51629
GTEX Portal (Tissue expression)SLC25A39
Human Protein AtlasENSG00000013306-SLC25A39 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZJ4
Splice isoforms : SwissVarQ9BZJ4
PhosPhoSitePlusQ9BZJ4
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A39
DMDM Disease mutations51629
Blocks (Seattle)SLC25A39
SuperfamilyQ9BZJ4
Human Protein Atlas [tissue]ENSG00000013306-SLC25A39 [tissue]
Peptide AtlasQ9BZJ4
HPRD13040
IPIIPI00019477   IPI00743132   IPI01009870   IPI00555633   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZJ4
IntAct (EBI)Q9BZJ4
FunCoupENSG00000013306
BioGRIDSLC25A39
STRING (EMBL)SLC25A39
ZODIACSLC25A39
Ontologies - Pathways
QuickGOQ9BZJ4
Ontology : AmiGOmitochondrial inner membrane  heme biosynthetic process  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBImitochondrial inner membrane  heme biosynthetic process  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC25A39
Atlas of Cancer Signalling NetworkSLC25A39
Wikipedia pathwaysSLC25A39
Orthology - Evolution
OrthoDB51629
GeneTree (enSembl)ENSG00000013306
Phylogenetic Trees/Animal Genes : TreeFamSLC25A39
HOVERGENQ9BZJ4
HOGENOMQ9BZJ4
Homologs : HomoloGeneSLC25A39
Homology/Alignments : Family Browser (UCSC)SLC25A39
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC25A39
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A39 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A39
dbVarSLC25A39
ClinVarSLC25A39
1000_GenomesSLC25A39 
Exome Variant ServerSLC25A39
ExAC (Exome Aggregation Consortium)ENSG00000013306
GNOMAD BrowserENSG00000013306
Genetic variants : HAPMAP51629
Genomic Variants (DGV)SLC25A39 [DGVbeta]
DECIPHERSLC25A39 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A39 
Mutations
ICGC Data PortalSLC25A39 
TCGA Data PortalSLC25A39 
Broad Tumor PortalSLC25A39
OASIS PortalSLC25A39 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A39  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A39
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A39
DgiDB (Drug Gene Interaction Database)SLC25A39
DoCM (Curated mutations)SLC25A39 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A39 (select a term)
intoGenSLC25A39
Cancer3DSLC25A39(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610820   
Orphanet
MedgenSLC25A39
Genetic Testing Registry SLC25A39
NextProtQ9BZJ4 [Medical]
TSGene51629
GENETestsSLC25A39
Target ValidationSLC25A39
Huge Navigator SLC25A39 [HugePedia]
snp3D : Map Gene to Disease51629
BioCentury BCIQSLC25A39
ClinGenSLC25A39
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51629
Chemical/Pharm GKB GenePA162403626
Clinical trialSLC25A39
Miscellaneous
canSAR (ICR)SLC25A39 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A39
EVEXSLC25A39
GoPubMedSLC25A39
iHOPSLC25A39
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:26 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.