Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A4 (solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4)

Identity

Other names1
AAC1
ANT
ANT 1
ANT1
MTDPS12
PEO2
PEO3
T1
HGNC (Hugo) SLC25A4
LocusID (NCBI) 291
Location 4q35.1
Location_base_pair Starts at 186064417 and ends at 186071538 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC25A4   10990
Cards
Entrez_Gene (NCBI)SLC25A4  291  solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4
GeneCards (Weizmann)SLC25A4
Ensembl (Hinxton)ENSG00000151729 [Gene_View]  chr4:186064417-186071538 [Contig_View]  SLC25A4 [Vega]
ICGC DataPortalENSG00000151729
AceView (NCBI)SLC25A4
Genatlas (Paris)SLC25A4
WikiGenes291
SOURCE (Princeton)NM_001151
Genomic and cartography
GoldenPath (UCSC)SLC25A4  -  4q35.1   chr4:186064417-186071538 +  4q35.1   [Description]    (hg19-Feb_2009)
EnsemblSLC25A4 - 4q35.1 [CytoView]
Mapping of homologs : NCBISLC25A4 [Mapview]
OMIM103220   609283   615418   
Gene and transcription
Genbank (Entrez)AB209764 AF052119 AK291902 BC008664 BC061589
RefSeq transcript (Entrez)NM_001151
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NG_013001 NT_016354 NW_001838921 NW_004929320
Consensus coding sequences : CCDS (NCBI)SLC25A4
Cluster EST : UnigeneHs.246506 [ NCBI ]
CGAP (NCI)Hs.246506
Alternative Splicing : Fast-db (Paris)GSHG0023019
Alternative Splicing GalleryENSG00000151729
Gene ExpressionSLC25A4 [ NCBI-GEO ]     SLC25A4 [ SEEK ]   SLC25A4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP12235 (Uniprot)
NextProtP12235  [Medical]
With graphics : InterProP12235
Splice isoforms : SwissVarP12235 (Swissvar)
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Aden_trnslctor    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Related proteins : CluSTrP12235
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
DMDM Disease mutations291
Blocks (Seattle)P12235
Human Protein AtlasENSG00000151729
Peptide AtlasP12235
HPRD00058
IPIIPI00022891   IPI00556601   
Protein Interaction databases
DIP (DOE-UCLA)P12235
IntAct (EBI)P12235
FunCoupENSG00000151729
BioGRIDSLC25A4
IntegromeDBSLC25A4
STRING (EMBL)SLC25A4
Ontologies - Pathways
QuickGOP12235
Ontology : AmiGOmitochondrial genome maintenance  protein binding  nucleus  mitochondrion  mitochondrial inner membrane  integral component of plasma membrane  generation of precursor metabolites and energy  energy reserve metabolic process  transport  apoptotic mitochondrial changes  adenine transmembrane transporter activity  adenine transport  viral process  small molecule metabolic process  regulation of insulin secretion  transmembrane transport  negative regulation of necroptotic process  
Ontology : EGO-EBImitochondrial genome maintenance  protein binding  nucleus  mitochondrion  mitochondrial inner membrane  integral component of plasma membrane  generation of precursor metabolites and energy  energy reserve metabolic process  transport  apoptotic mitochondrial changes  adenine transmembrane transporter activity  adenine transport  viral process  small molecule metabolic process  regulation of insulin secretion  transmembrane transport  negative regulation of necroptotic process  
Pathways : BIOCARTAElectron Transport Reaction in Mitochondria [Genes]   
Pathways : KEGGCalcium signaling pathway    Parkinson's disease    Huntington's disease    HTLV-I infection   
Protein Interaction DatabaseSLC25A4
Wikipedia pathwaysSLC25A4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SLC25A4
SNP (GeneSNP Utah)SLC25A4
SNP : HGBaseSLC25A4
Genetic variants : HAPMAPSLC25A4
1000_GenomesSLC25A4 
ICGC programENSG00000151729 
CONAN: Copy Number AnalysisSLC25A4 
Somatic Mutations in Cancer : COSMICSLC25A4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
DECIPHER (Syndromes)4:186064417-186071538
Mutations and Diseases : HGMDSLC25A4
OMIM103220    609283    615418   
MedgenSLC25A4
GENETestsSLC25A4
Disease Genetic AssociationSLC25A4
Huge Navigator SLC25A4 [HugePedia]  SLC25A4 [HugeCancerGEM]
Genomic VariantsSLC25A4  SLC25A4 [DGVbeta]
Exome VariantSLC25A4
dbVarSLC25A4
ClinVarSLC25A4
snp3D : Map Gene to Disease291
General knowledge
Homologs : HomoloGeneSLC25A4
Homology/Alignments : Family Browser (UCSC)SLC25A4
Phylogenetic Trees/Animal Genes : TreeFamSLC25A4
Chemical/Protein Interactions : CTD291
Chemical/Pharm GKB GenePA35866
Clinical trialSLC25A4
Cancer Resource (Charite)ENSG00000151729
Other databases
Probes
Litterature
PubMed111 Pubmed reference(s) in Entrez
CoreMineSLC25A4
GoPubMedSLC25A4
iHOPSLC25A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:57:08 CET 2014

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