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SLC25A40 (solute carrier family 25 member 40)

Identity

Alias_namessolute carrier family 25, member 40
Alias_symbol (synonym)MCFP
Other alias
HGNC (Hugo) SLC25A40
LocusID (NCBI) 55972
Atlas_Id 73361
Location 7q21.12  [Link to chromosome band 7q21]
Location_base_pair Starts at 87834499 and ends at 87876377 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A40   29680
Cards
Entrez_Gene (NCBI)SLC25A40  55972  solute carrier family 25 member 40
AliasesMCFP
GeneCards (Weizmann)SLC25A40
Ensembl hg19 (Hinxton)ENSG00000075303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075303 [Gene_View]  chr7:87834499-87876377 [Contig_View]  SLC25A40 [Vega]
ICGC DataPortalENSG00000075303
TCGA cBioPortalSLC25A40
AceView (NCBI)SLC25A40
Genatlas (Paris)SLC25A40
WikiGenes55972
SOURCE (Princeton)SLC25A40
Genetics Home Reference (NIH)SLC25A40
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A40  -     chr7:87834499-87876377 -  7q21.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A40  -     7q21.12   [Description]    (hg19-Feb_2009)
EnsemblSLC25A40 - 7q21.12 [CytoView hg19]  SLC25A40 - 7q21.12 [CytoView hg38]
Mapping of homologs : NCBISLC25A40 [Mapview hg19]  SLC25A40 [Mapview hg38]
OMIM610821   
Gene and transcription
Genbank (Entrez)AF125531 AI037919 AK223020 AK290848 BC027322
RefSeq transcript (Entrez)NM_018843
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A40
Cluster EST : UnigeneHs.208414 [ NCBI ]
CGAP (NCI)Hs.208414
Alternative Splicing GalleryENSG00000075303
Gene ExpressionSLC25A40 [ NCBI-GEO ]   SLC25A40 [ EBI - ARRAY_EXPRESS ]   SLC25A40 [ SEEK ]   SLC25A40 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55972
GTEX Portal (Tissue expression)SLC25A40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBP6
Splice isoforms : SwissVarQ8TBP6
PhosPhoSitePlusQ8TBP6
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A40
DMDM Disease mutations55972
Blocks (Seattle)SLC25A40
SuperfamilyQ8TBP6
Human Protein AtlasENSG00000075303
Peptide AtlasQ8TBP6
HPRD14372
IPIIPI00290827   IPI00926245   IPI00927815   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBP6
IntAct (EBI)Q8TBP6
FunCoupENSG00000075303
BioGRIDSLC25A40
STRING (EMBL)SLC25A40
ZODIACSLC25A40
Ontologies - Pathways
QuickGOQ8TBP6
Ontology : AmiGOmitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBImitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC25A40
Atlas of Cancer Signalling NetworkSLC25A40
Wikipedia pathwaysSLC25A40
Orthology - Evolution
OrthoDB55972
GeneTree (enSembl)ENSG00000075303
Phylogenetic Trees/Animal Genes : TreeFamSLC25A40
HOVERGENQ8TBP6
HOGENOMQ8TBP6
Homologs : HomoloGeneSLC25A40
Homology/Alignments : Family Browser (UCSC)SLC25A40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A40
dbVarSLC25A40
ClinVarSLC25A40
1000_GenomesSLC25A40 
Exome Variant ServerSLC25A40
ExAC (Exome Aggregation Consortium)SLC25A40 (select the gene name)
Genetic variants : HAPMAP55972
Genomic Variants (DGV)SLC25A40 [DGVbeta]
DECIPHERSLC25A40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A40 
Mutations
ICGC Data PortalSLC25A40 
TCGA Data PortalSLC25A40 
Broad Tumor PortalSLC25A40
OASIS PortalSLC25A40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A40
DgiDB (Drug Gene Interaction Database)SLC25A40
DoCM (Curated mutations)SLC25A40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A40 (select a term)
intoGenSLC25A40
Cancer3DSLC25A40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610821   
Orphanet
MedgenSLC25A40
Genetic Testing Registry SLC25A40
NextProtQ8TBP6 [Medical]
TSGene55972
GENETestsSLC25A40
Target ValidationSLC25A40
Huge Navigator SLC25A40 [HugePedia]
snp3D : Map Gene to Disease55972
BioCentury BCIQSLC25A40
ClinGenSLC25A40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55972
Chemical/Pharm GKB GenePA162403655
Clinical trialSLC25A40
Miscellaneous
canSAR (ICR)SLC25A40 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A40
EVEXSLC25A40
GoPubMedSLC25A40
iHOPSLC25A40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:41:06 CEST 2017

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