Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A42 (solute carrier family 25 member 42)

Identity

Alias_namessolute carrier family 25
Alias_symbol (synonym)MGC26694
Other alias-
HGNC (Hugo) SLC25A42
LocusID (NCBI) 284439
Atlas_Id 41352
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19174803 and ends at 19223841 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EEF2 (19p13.3) / SLC25A42 (19p13.11)KDM4B (19p13.3) / SLC25A42 (19p13.11)SLC25A42 (19p13.11) / ARMC6 (19p13.11)
KDM4B 19p13.3 / SLC25A42 19p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A42   28380
Cards
Entrez_Gene (NCBI)SLC25A42  284439  solute carrier family 25 member 42
Aliases
GeneCards (Weizmann)SLC25A42
Ensembl hg19 (Hinxton)ENSG00000181035 [Gene_View]  chr19:19174803-19223841 [Contig_View]  SLC25A42 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181035 [Gene_View]  chr19:19174803-19223841 [Contig_View]  SLC25A42 [Vega]
ICGC DataPortalENSG00000181035
TCGA cBioPortalSLC25A42
AceView (NCBI)SLC25A42
Genatlas (Paris)SLC25A42
WikiGenes284439
SOURCE (Princeton)SLC25A42
Genetics Home Reference (NIH)SLC25A42
Genomic and cartography
GoldenPath hg19 (UCSC)SLC25A42  -     chr19:19174803-19223841 +  19p13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC25A42  -     19p13.11   [Description]    (hg38-Dec_2013)
EnsemblSLC25A42 - 19p13.11 [CytoView hg19]  SLC25A42 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBISLC25A42 [Mapview hg19]  SLC25A42 [Mapview hg38]
OMIM610823   
Gene and transcription
Genbank (Entrez)AF521885 AI057363 AK303785 BC041973 BC045598
RefSeq transcript (Entrez)NM_001321544 NM_178526
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)SLC25A42
Cluster EST : UnigeneHs.303669 [ NCBI ]
CGAP (NCI)Hs.303669
Alternative Splicing GalleryENSG00000181035
Gene ExpressionSLC25A42 [ NCBI-GEO ]   SLC25A42 [ EBI - ARRAY_EXPRESS ]   SLC25A42 [ SEEK ]   SLC25A42 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284439
GTEX Portal (Tissue expression)SLC25A42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VD7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VD7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VD7
Splice isoforms : SwissVarQ86VD7
PhosPhoSitePlusQ86VD7
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)DNA_mismatch_repair_CS    Graves_DC    Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A42
DMDM Disease mutations284439
Blocks (Seattle)SLC25A42
SuperfamilyQ86VD7
Human Protein AtlasENSG00000181035
Peptide AtlasQ86VD7
HPRD17523
IPIIPI00783847   IPI00169262   
Protein Interaction databases
DIP (DOE-UCLA)Q86VD7
IntAct (EBI)Q86VD7
FunCoupENSG00000181035
BioGRIDSLC25A42
STRING (EMBL)SLC25A42
ZODIACSLC25A42
Ontologies - Pathways
QuickGOQ86VD7
Ontology : AmiGOstructural constituent of ribosome  ATP transmembrane transporter activity  nucleus  mitochondrion  mitochondrial inner membrane  translation  ADP transmembrane transporter activity  coenzyme A transmembrane transporter activity  ADP transport  ATP transport  integral component of membrane  coenzyme A transmembrane transport  adenosine-diphosphatase activity  AMP transport  AMP transmembrane transporter activity  
Ontology : EGO-EBIstructural constituent of ribosome  ATP transmembrane transporter activity  nucleus  mitochondrion  mitochondrial inner membrane  translation  ADP transmembrane transporter activity  coenzyme A transmembrane transporter activity  ADP transport  ATP transport  integral component of membrane  coenzyme A transmembrane transport  adenosine-diphosphatase activity  AMP transport  AMP transmembrane transporter activity  
NDEx NetworkSLC25A42
Atlas of Cancer Signalling NetworkSLC25A42
Wikipedia pathwaysSLC25A42
Orthology - Evolution
OrthoDB284439
GeneTree (enSembl)ENSG00000181035
Phylogenetic Trees/Animal Genes : TreeFamSLC25A42
HOVERGENQ86VD7
HOGENOMQ86VD7
Homologs : HomoloGeneSLC25A42
Homology/Alignments : Family Browser (UCSC)SLC25A42
Gene fusions - Rearrangements
Fusion : MitelmanKDM4B/SLC25A42 [19p13.3/19p13.11]  [t(19;19)(p13;p13)]  
Fusion: TCGAKDM4B 19p13.3 SLC25A42 19p13.11 SKCM
Fusion Cancer (Beijing)EEF2 [19p13.3]  -  SLC25A42 [19p13.11]  [FUSC004286]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A42
dbVarSLC25A42
ClinVarSLC25A42
1000_GenomesSLC25A42 
Exome Variant ServerSLC25A42
ExAC (Exome Aggregation Consortium)SLC25A42 (select the gene name)
Genetic variants : HAPMAP284439
Genomic Variants (DGV)SLC25A42 [DGVbeta]
DECIPHER (Syndromes)19:19174803-19223841  ENSG00000181035
CONAN: Copy Number AnalysisSLC25A42 
Mutations
ICGC Data PortalSLC25A42 
TCGA Data PortalSLC25A42 
Broad Tumor PortalSLC25A42
OASIS PortalSLC25A42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A42
DgiDB (Drug Gene Interaction Database)SLC25A42
DoCM (Curated mutations)SLC25A42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A42 (select a term)
intoGenSLC25A42
Cancer3DSLC25A42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610823   
Orphanet
MedgenSLC25A42
Genetic Testing Registry SLC25A42
NextProtQ86VD7 [Medical]
TSGene284439
GENETestsSLC25A42
Huge Navigator SLC25A42 [HugePedia]
snp3D : Map Gene to Disease284439
BioCentury BCIQSLC25A42
ClinGenSLC25A42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284439
Chemical/Pharm GKB GenePA162403703
Clinical trialSLC25A42
Miscellaneous
canSAR (ICR)SLC25A42 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A42
EVEXSLC25A42
GoPubMedSLC25A42
iHOPSLC25A42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:39 CET 2017

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