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SLC25A43 (solute carrier family 25 member 43)

Identity

Alias_namessolute carrier family 25
Other alias-
HGNC (Hugo) SLC25A43
LocusID (NCBI) 203427
Atlas_Id 52835
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 119399295 and ends at 119454474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLPTM1L (5p15.33) / SLC25A43 (Xq24)SLC25A43 (Xq24) / SLC25A43 (Xq24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A43   30557
Cards
Entrez_Gene (NCBI)SLC25A43  203427  solute carrier family 25 member 43
Aliases
GeneCards (Weizmann)SLC25A43
Ensembl hg19 (Hinxton)ENSG00000077713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077713 [Gene_View]  chrX:119399295-119454474 [Contig_View]  SLC25A43 [Vega]
ICGC DataPortalENSG00000077713
TCGA cBioPortalSLC25A43
AceView (NCBI)SLC25A43
Genatlas (Paris)SLC25A43
WikiGenes203427
SOURCE (Princeton)SLC25A43
Genetics Home Reference (NIH)SLC25A43
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A43  -     chrX:119399295-119454474 +  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A43  -     Xq24   [Description]    (hg19-Feb_2009)
EnsemblSLC25A43 - Xq24 [CytoView hg19]  SLC25A43 - Xq24 [CytoView hg38]
Mapping of homologs : NCBISLC25A43 [Mapview hg19]  SLC25A43 [Mapview hg38]
OMIM300641   
Gene and transcription
Genbank (Entrez)AK091304 AK094254 AK292035 AK303932 AL590525
RefSeq transcript (Entrez)NM_145305
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A43
Cluster EST : UnigeneHs.496658 [ NCBI ]
CGAP (NCI)Hs.496658
Alternative Splicing GalleryENSG00000077713
Gene ExpressionSLC25A43 [ NCBI-GEO ]   SLC25A43 [ EBI - ARRAY_EXPRESS ]   SLC25A43 [ SEEK ]   SLC25A43 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203427
GTEX Portal (Tissue expression)SLC25A43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUT9
Splice isoforms : SwissVarQ8WUT9
PhosPhoSitePlusQ8WUT9
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A43
DMDM Disease mutations203427
Blocks (Seattle)SLC25A43
SuperfamilyQ8WUT9
Human Protein AtlasENSG00000077713
Peptide AtlasQ8WUT9
HPRD06617
IPIIPI00335044   IPI00843805   IPI00910157   IPI00977560   IPI00386571   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUT9
IntAct (EBI)Q8WUT9
FunCoupENSG00000077713
BioGRIDSLC25A43
STRING (EMBL)SLC25A43
ZODIACSLC25A43
Ontologies - Pathways
QuickGOQ8WUT9
Ontology : AmiGOmitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBImitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC25A43
Atlas of Cancer Signalling NetworkSLC25A43
Wikipedia pathwaysSLC25A43
Orthology - Evolution
OrthoDB203427
GeneTree (enSembl)ENSG00000077713
Phylogenetic Trees/Animal Genes : TreeFamSLC25A43
HOVERGENQ8WUT9
HOGENOMQ8WUT9
Homologs : HomoloGeneSLC25A43
Homology/Alignments : Family Browser (UCSC)SLC25A43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A43
dbVarSLC25A43
ClinVarSLC25A43
1000_GenomesSLC25A43 
Exome Variant ServerSLC25A43
ExAC (Exome Aggregation Consortium)SLC25A43 (select the gene name)
Genetic variants : HAPMAP203427
Genomic Variants (DGV)SLC25A43 [DGVbeta]
DECIPHERSLC25A43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A43 
Mutations
ICGC Data PortalSLC25A43 
TCGA Data PortalSLC25A43 
Broad Tumor PortalSLC25A43
OASIS PortalSLC25A43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A43
DgiDB (Drug Gene Interaction Database)SLC25A43
DoCM (Curated mutations)SLC25A43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A43 (select a term)
intoGenSLC25A43
Cancer3DSLC25A43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300641   
Orphanet
MedgenSLC25A43
Genetic Testing Registry SLC25A43
NextProtQ8WUT9 [Medical]
TSGene203427
GENETestsSLC25A43
Target ValidationSLC25A43
Huge Navigator SLC25A43 [HugePedia]
snp3D : Map Gene to Disease203427
BioCentury BCIQSLC25A43
ClinGenSLC25A43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD203427
Chemical/Pharm GKB GenePA162403704
Clinical trialSLC25A43
Miscellaneous
canSAR (ICR)SLC25A43 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A43
EVEXSLC25A43
GoPubMedSLC25A43
iHOPSLC25A43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:31:27 CEST 2017

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