Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC25A43 (solute carrier family 25 member 43)

Identity

Alias (NCBI)-
HGNC (Hugo) SLC25A43
HGNC Previous namesolute carrier family 25, member 43
LocusID (NCBI) 203427
Atlas_Id 52835
Location Xq24  [Link to chromosome band Xq24]
Location_base_pair Starts at 119399336 and ends at 119454474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CLPTM1L (5p15.33) / SLC25A43 (Xq24)SLC25A43 (Xq24) / SLC25A43 (Xq24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC25A43   30557
Cards
Entrez_Gene (NCBI)SLC25A43    solute carrier family 25 member 43
Aliases
GeneCards (Weizmann)SLC25A43
Ensembl hg19 (Hinxton)ENSG00000077713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000077713 [Gene_View]  ENSG00000077713 [Sequence]  chrX:119399336-119454474 [Contig_View]  SLC25A43 [Vega]
ICGC DataPortalENSG00000077713
TCGA cBioPortalSLC25A43
AceView (NCBI)SLC25A43
Genatlas (Paris)SLC25A43
SOURCE (Princeton)SLC25A43
Genetics Home Reference (NIH)SLC25A43
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A43  -     chrX:119399336-119454474 +  Xq24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A43  -     Xq24   [Description]    (hg19-Feb_2009)
GoldenPathSLC25A43 - Xq24 [CytoView hg19]  SLC25A43 - Xq24 [CytoView hg38]
ImmunoBaseENSG00000077713
Genome Data Viewer NCBISLC25A43 [Mapview hg19]  
OMIM300641   
Gene and transcription
Genbank (Entrez)AK091304 AK094254 AK292035 AK303932 AL590525
RefSeq transcript (Entrez)NM_145305
Consensus coding sequences : CCDS (NCBI)SLC25A43
Gene ExpressionSLC25A43 [ NCBI-GEO ]   SLC25A43 [ EBI - ARRAY_EXPRESS ]   SLC25A43 [ SEEK ]   SLC25A43 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A43 [ Firebrowse - Broad ]
GenevisibleExpression of SLC25A43 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)203427
GTEX Portal (Tissue expression)SLC25A43
Human Protein AtlasENSG00000077713-SLC25A43 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUT9
PhosPhoSitePlusQ8WUT9
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom_sf   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A43
SuperfamilyQ8WUT9
AlphaFold pdb e-kbQ8WUT9   
Human Protein Atlas [tissue]ENSG00000077713-SLC25A43 [tissue]
HPRD06617
Protein Interaction databases
DIP (DOE-UCLA)Q8WUT9
IntAct (EBI)Q8WUT9
BioGRIDSLC25A43
STRING (EMBL)SLC25A43
ZODIACSLC25A43
Ontologies - Pathways
QuickGOQ8WUT9
Ontology : AmiGOmitochondrial inner membrane  integral component of membrane  transmembrane transport  
Ontology : EGO-EBImitochondrial inner membrane  integral component of membrane  transmembrane transport  
NDEx NetworkSLC25A43
Atlas of Cancer Signalling NetworkSLC25A43
Wikipedia pathwaysSLC25A43
Orthology - Evolution
OrthoDB203427
GeneTree (enSembl)ENSG00000077713
Phylogenetic Trees/Animal Genes : TreeFamSLC25A43
Homologs : HomoloGeneSLC25A43
Homology/Alignments : Family Browser (UCSC)SLC25A43
Gene fusions - Rearrangements
Fusion : QuiverSLC25A43
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A43
dbVarSLC25A43
ClinVarSLC25A43
MonarchSLC25A43
1000_GenomesSLC25A43 
Exome Variant ServerSLC25A43
GNOMAD BrowserENSG00000077713
Varsome BrowserSLC25A43
ACMGSLC25A43 variants
VarityQ8WUT9
Genomic Variants (DGV)SLC25A43 [DGVbeta]
DECIPHERSLC25A43 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A43 
Mutations
ICGC Data PortalSLC25A43 
TCGA Data PortalSLC25A43 
Broad Tumor PortalSLC25A43
OASIS PortalSLC25A43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A43  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC25A43
Mutations and Diseases : HGMDSLC25A43
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC25A43
DgiDB (Drug Gene Interaction Database)SLC25A43
DoCM (Curated mutations)SLC25A43
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A43
Cancer3DSLC25A43
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300641   
Orphanet
DisGeNETSLC25A43
MedgenSLC25A43
Genetic Testing Registry SLC25A43
NextProtQ8WUT9 [Medical]
GENETestsSLC25A43
Target ValidationSLC25A43
Huge Navigator SLC25A43 [HugePedia]
ClinGenSLC25A43
Clinical trials, drugs, therapy
MyCancerGenomeSLC25A43
Protein Interactions : CTDSLC25A43
Pharm GKB GenePA162403704
PharosQ8WUT9
Clinical trialSLC25A43
Miscellaneous
canSAR (ICR)SLC25A43
HarmonizomeSLC25A43
DataMed IndexSLC25A43
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC25A43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:31:34 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.