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SLC25A44 (solute carrier family 25 member 44)

Identity

Alias_namessolute carrier family 25, member 44
Alias_symbol (synonym)FLJ90431
KIAA0446
Other alias-
HGNC (Hugo) SLC25A44
LocusID (NCBI) 9673
Atlas_Id 73363
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156193932 and ends at 156212796 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTG1 (17q25.3) / SLC25A44 (1q22)SLC25A44 (1q22) / IGF2R (6q25.3)SLC25A44 (1q22) / LMNA (1q22)
SLC25A44 (1q22) / PMF1 (1q22)SLC25A44 (1q22) / PRKACB (1p31.1)SLC25A44 (1q22) / RIPK2 (8q21.3)
SLC25A44 (1q22) / SLC20A2 (8p11.21)ZNF395 (8p21.1) / SLC25A44 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A44   29036
Cards
Entrez_Gene (NCBI)SLC25A44  9673  solute carrier family 25 member 44
Aliases
GeneCards (Weizmann)SLC25A44
Ensembl hg19 (Hinxton)ENSG00000160785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160785 [Gene_View]  chr1:156193932-156212796 [Contig_View]  SLC25A44 [Vega]
ICGC DataPortalENSG00000160785
TCGA cBioPortalSLC25A44
AceView (NCBI)SLC25A44
Genatlas (Paris)SLC25A44
WikiGenes9673
SOURCE (Princeton)SLC25A44
Genetics Home Reference (NIH)SLC25A44
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A44  -     chr1:156193932-156212796 +  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A44  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblSLC25A44 - 1q22 [CytoView hg19]  SLC25A44 - 1q22 [CytoView hg38]
Mapping of homologs : NCBISLC25A44 [Mapview hg19]  SLC25A44 [Mapview hg38]
OMIM610824   
Gene and transcription
Genbank (Entrez)AB007915 AK074912 AK075002 AK293778 AK294524
RefSeq transcript (Entrez)NM_001135672 NM_001286184 NM_014655
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A44
Cluster EST : UnigeneHs.626091 [ NCBI ]
CGAP (NCI)Hs.626091
Alternative Splicing GalleryENSG00000160785
Gene ExpressionSLC25A44 [ NCBI-GEO ]   SLC25A44 [ EBI - ARRAY_EXPRESS ]   SLC25A44 [ SEEK ]   SLC25A44 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9673
GTEX Portal (Tissue expression)SLC25A44
Human Protein AtlasENSG00000160785-SLC25A44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96H78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96H78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96H78
Splice isoforms : SwissVarQ96H78
PhosPhoSitePlusQ96H78
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A44
DMDM Disease mutations9673
Blocks (Seattle)SLC25A44
SuperfamilyQ96H78
Human Protein Atlas [tissue]ENSG00000160785-SLC25A44 [tissue]
Peptide AtlasQ96H78
HPRD17190
IPIIPI00477527   IPI00910227   IPI00909822   IPI00910967   IPI00929128   
Protein Interaction databases
DIP (DOE-UCLA)Q96H78
IntAct (EBI)Q96H78
FunCoupENSG00000160785
BioGRIDSLC25A44
STRING (EMBL)SLC25A44
ZODIACSLC25A44
Ontologies - Pathways
QuickGOQ96H78
Ontology : AmiGOmitochondrial inner membrane  mitochondrial transport  transmembrane transporter activity  integral component of mitochondrial outer membrane  transmembrane transport  
Ontology : EGO-EBImitochondrial inner membrane  mitochondrial transport  transmembrane transporter activity  integral component of mitochondrial outer membrane  transmembrane transport  
NDEx NetworkSLC25A44
Atlas of Cancer Signalling NetworkSLC25A44
Wikipedia pathwaysSLC25A44
Orthology - Evolution
OrthoDB9673
GeneTree (enSembl)ENSG00000160785
Phylogenetic Trees/Animal Genes : TreeFamSLC25A44
HOVERGENQ96H78
HOGENOMQ96H78
Homologs : HomoloGeneSLC25A44
Homology/Alignments : Family Browser (UCSC)SLC25A44
Gene fusions - Rearrangements
Fusion: Tumor Portal SLC25A44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A44
dbVarSLC25A44
ClinVarSLC25A44
1000_GenomesSLC25A44 
Exome Variant ServerSLC25A44
ExAC (Exome Aggregation Consortium)ENSG00000160785
GNOMAD BrowserENSG00000160785
Genetic variants : HAPMAP9673
Genomic Variants (DGV)SLC25A44 [DGVbeta]
DECIPHERSLC25A44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A44 
Mutations
ICGC Data PortalSLC25A44 
TCGA Data PortalSLC25A44 
Broad Tumor PortalSLC25A44
OASIS PortalSLC25A44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC25A44
DgiDB (Drug Gene Interaction Database)SLC25A44
DoCM (Curated mutations)SLC25A44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A44 (select a term)
intoGenSLC25A44
Cancer3DSLC25A44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610824   
Orphanet
MedgenSLC25A44
Genetic Testing Registry SLC25A44
NextProtQ96H78 [Medical]
TSGene9673
GENETestsSLC25A44
Target ValidationSLC25A44
Huge Navigator SLC25A44 [HugePedia]
snp3D : Map Gene to Disease9673
BioCentury BCIQSLC25A44
ClinGenSLC25A44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9673
Chemical/Pharm GKB GenePA162403705
Clinical trialSLC25A44
Miscellaneous
canSAR (ICR)SLC25A44 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A44
EVEXSLC25A44
GoPubMedSLC25A44
iHOPSLC25A44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:27:27 CET 2017

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