Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC25A45 (solute carrier family 25 member 45)

Identity

Alias_namessolute carrier family 25, member 45
Other alias-
HGNC (Hugo) SLC25A45
LocusID (NCBI) 283130
Atlas_Id 73364
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65375192 and ends at 65382674 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		MRPL49 (11q13.1) / SLC25A45 (11q13.1)SLC25A45 (11q13.1) / CAMTA1 (1p36.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLC25A45   27442
Cards
Entrez_Gene (NCBI)SLC25A45  283130  solute carrier family 25 member 45
Aliases
GeneCards (Weizmann)SLC25A45
Ensembl hg19 (Hinxton)ENSG00000162241 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162241 [Gene_View]  chr11:65375192-65382674 [Contig_View]  SLC25A45 [Vega]
ICGC DataPortalENSG00000162241
TCGA cBioPortalSLC25A45
AceView (NCBI)SLC25A45
Genatlas (Paris)SLC25A45
WikiGenes283130
SOURCE (Princeton)SLC25A45
Genetics Home Reference (NIH)SLC25A45
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A45  -     chr11:65375192-65382674 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A45  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblSLC25A45 - 11q13.1 [CytoView hg19]  SLC25A45 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISLC25A45 [Mapview hg19]  SLC25A45 [Mapview hg38]
OMIM610825   
Gene and transcription
Genbank (Entrez)AK090434 AK091190 AK124022 AY597807 BC036869
RefSeq transcript (Entrez)NM_001077241 NM_001278250 NM_001278251 NM_001300820 NM_182556
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A45
Cluster EST : UnigeneHs.661604 [ NCBI ]
CGAP (NCI)Hs.661604
Alternative Splicing GalleryENSG00000162241
Gene ExpressionSLC25A45 [ NCBI-GEO ]   SLC25A45 [ EBI - ARRAY_EXPRESS ]   SLC25A45 [ SEEK ]   SLC25A45 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283130
GTEX Portal (Tissue expression)SLC25A45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N413   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N413  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N413
Splice isoforms : SwissVarQ8N413
PhosPhoSitePlusQ8N413
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A45
DMDM Disease mutations283130
Blocks (Seattle)SLC25A45
SuperfamilyQ8N413
Human Protein AtlasENSG00000162241
Peptide AtlasQ8N413
HPRD14142
IPIIPI00793288   IPI00386186   IPI00217118   IPI00868696   IPI00981091   IPI00983806   IPI00982769   IPI00979077   IPI00985383   
Protein Interaction databases
DIP (DOE-UCLA)Q8N413
IntAct (EBI)Q8N413
FunCoupENSG00000162241
BioGRIDSLC25A45
STRING (EMBL)SLC25A45
ZODIACSLC25A45
Ontologies - Pathways
QuickGOQ8N413
Ontology : AmiGOL-ornithine transmembrane transporter activity  mitochondrial ornithine transport  mitochondrial inner membrane  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBIL-ornithine transmembrane transporter activity  mitochondrial ornithine transport  mitochondrial inner membrane  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC25A45
Atlas of Cancer Signalling NetworkSLC25A45
Wikipedia pathwaysSLC25A45
Orthology - Evolution
OrthoDB283130
GeneTree (enSembl)ENSG00000162241
Phylogenetic Trees/Animal Genes : TreeFamSLC25A45
HOVERGENQ8N413
HOGENOMQ8N413
Homologs : HomoloGeneSLC25A45
Homology/Alignments : Family Browser (UCSC)SLC25A45
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A45
dbVarSLC25A45
ClinVarSLC25A45
1000_GenomesSLC25A45 
Exome Variant ServerSLC25A45
ExAC (Exome Aggregation Consortium)SLC25A45 (select the gene name)
Genetic variants : HAPMAP283130
Genomic Variants (DGV)SLC25A45 [DGVbeta]
DECIPHERSLC25A45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A45 
Mutations
ICGC Data PortalSLC25A45 
TCGA Data PortalSLC25A45 
Broad Tumor PortalSLC25A45
OASIS PortalSLC25A45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A45
DgiDB (Drug Gene Interaction Database)SLC25A45
DoCM (Curated mutations)SLC25A45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A45 (select a term)
intoGenSLC25A45
Cancer3DSLC25A45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610825   
Orphanet
MedgenSLC25A45
Genetic Testing Registry SLC25A45
NextProtQ8N413 [Medical]
TSGene283130
GENETestsSLC25A45
Target ValidationSLC25A45
Huge Navigator SLC25A45 [HugePedia]
snp3D : Map Gene to Disease283130
BioCentury BCIQSLC25A45
ClinGenSLC25A45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283130
Chemical/Pharm GKB GenePA162403718
Clinical trialSLC25A45
Miscellaneous
canSAR (ICR)SLC25A45 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A45
EVEXSLC25A45
GoPubMedSLC25A45
iHOPSLC25A45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:41:06 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.