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SLC25A46 (solute carrier family 25 member 46)

Identity

Other aliasHMSN6B
HGNC (Hugo) SLC25A46
LocusID (NCBI) 91137
Atlas_Id 56912
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 110738972 and ends at 110765174 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NDP (Xp11.3) / SLC25A46 (5q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A46   25198
Cards
Entrez_Gene (NCBI)SLC25A46  91137  solute carrier family 25 member 46
AliasesHMSN6B
GeneCards (Weizmann)SLC25A46
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:110738972-110765174 [Contig_View]  SLC25A46 [Vega]
TCGA cBioPortalSLC25A46
AceView (NCBI)SLC25A46
Genatlas (Paris)SLC25A46
WikiGenes91137
SOURCE (Princeton)SLC25A46
Genetics Home Reference (NIH)SLC25A46
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A46  -     chr5:110738972-110765174 +  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A46  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblSLC25A46 - 5q22.1 [CytoView hg19]  SLC25A46 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBISLC25A46 [Mapview hg19]  SLC25A46 [Mapview hg38]
OMIM610826   616505   
Gene and transcription
Genbank (Entrez)AK091427 AK290217 AK300116 AK300123 AK302326
RefSeq transcript (Entrez)NM_001303249 NM_001303250 NM_138773
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A46
Cluster EST : UnigeneHs.75639 [ NCBI ]
CGAP (NCI)Hs.75639
Gene ExpressionSLC25A46 [ NCBI-GEO ]   SLC25A46 [ EBI - ARRAY_EXPRESS ]   SLC25A46 [ SEEK ]   SLC25A46 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91137
GTEX Portal (Tissue expression)SLC25A46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AG3
Splice isoforms : SwissVarQ96AG3
PhosPhoSitePlusQ96AG3
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A46
DMDM Disease mutations91137
Blocks (Seattle)SLC25A46
SuperfamilyQ96AG3
Peptide AtlasQ96AG3
IPIIPI00478497   IPI01009256   IPI00964126   IPI00910479   IPI00964396   IPI00964135   
Protein Interaction databases
DIP (DOE-UCLA)Q96AG3
IntAct (EBI)Q96AG3
BioGRIDSLC25A46
STRING (EMBL)SLC25A46
ZODIACSLC25A46
Ontologies - Pathways
QuickGOQ96AG3
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial outer membrane  transport  integral component of membrane  mitochondrial membrane fission  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial outer membrane  transport  integral component of membrane  mitochondrial membrane fission  
NDEx NetworkSLC25A46
Atlas of Cancer Signalling NetworkSLC25A46
Wikipedia pathwaysSLC25A46
Orthology - Evolution
OrthoDB91137
Phylogenetic Trees/Animal Genes : TreeFamSLC25A46
HOVERGENQ96AG3
HOGENOMQ96AG3
Homologs : HomoloGeneSLC25A46
Homology/Alignments : Family Browser (UCSC)SLC25A46
Gene fusions - Rearrangements
Tumor Fusion PortalSLC25A46
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A46
dbVarSLC25A46
ClinVarSLC25A46
1000_GenomesSLC25A46 
Exome Variant ServerSLC25A46
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP91137
Genomic Variants (DGV)SLC25A46 [DGVbeta]
DECIPHERSLC25A46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A46 
Mutations
ICGC Data PortalSLC25A46 
TCGA Data PortalSLC25A46 
Broad Tumor PortalSLC25A46
OASIS PortalSLC25A46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A46
DgiDB (Drug Gene Interaction Database)SLC25A46
DoCM (Curated mutations)SLC25A46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A46 (select a term)
intoGenSLC25A46
Cancer3DSLC25A46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610826    616505   
Orphanet
DisGeNETSLC25A46
MedgenSLC25A46
Genetic Testing Registry SLC25A46
NextProtQ96AG3 [Medical]
TSGene91137
GENETestsSLC25A46
Target ValidationSLC25A46
Huge Navigator SLC25A46 [HugePedia]
snp3D : Map Gene to Disease91137
BioCentury BCIQSLC25A46
ClinGenSLC25A46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91137
Chemical/Pharm GKB GenePA162403737
Clinical trialSLC25A46
Miscellaneous
canSAR (ICR)SLC25A46 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A46
EVEXSLC25A46
GoPubMedSLC25A46
iHOPSLC25A46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:35:01 CET 2017

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