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SLC25A47 (solute carrier family 25 member 47)

Identity

Alias_namesC14orf68
chromosome 14 open reading frame 68
solute carrier family 25, member 47
Other aliasHDMCP
HMFN1655
HGNC (Hugo) SLC25A47
LocusID (NCBI) 283600
Atlas_Id 45791
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 100323342 and ends at 100330378 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A47   20115
Cards
Entrez_Gene (NCBI)SLC25A47  283600  solute carrier family 25 member 47
AliasesC14orf68; HDMCP; HMFN1655
GeneCards (Weizmann)SLC25A47
Ensembl hg19 (Hinxton)ENSG00000140107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140107 [Gene_View]  chr14:100323342-100330378 [Contig_View]  SLC25A47 [Vega]
ICGC DataPortalENSG00000140107
TCGA cBioPortalSLC25A47
AceView (NCBI)SLC25A47
Genatlas (Paris)SLC25A47
WikiGenes283600
SOURCE (Princeton)SLC25A47
Genetics Home Reference (NIH)SLC25A47
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A47  -     chr14:100323342-100330378 +  14q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A47  -     14q32.2   [Description]    (hg19-Feb_2009)
EnsemblSLC25A47 - 14q32.2 [CytoView hg19]  SLC25A47 - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBISLC25A47 [Mapview hg19]  SLC25A47 [Mapview hg38]
OMIM609911   
Gene and transcription
Genbank (Entrez)AB073385 AK092001 AY569438 AY570298 BC137253
RefSeq transcript (Entrez)NM_001350877 NM_207117
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A47
Cluster EST : UnigeneHs.108268 [ NCBI ]
CGAP (NCI)Hs.108268
Alternative Splicing GalleryENSG00000140107
Gene ExpressionSLC25A47 [ NCBI-GEO ]   SLC25A47 [ EBI - ARRAY_EXPRESS ]   SLC25A47 [ SEEK ]   SLC25A47 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283600
GTEX Portal (Tissue expression)SLC25A47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Q0C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Q0C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Q0C1
Splice isoforms : SwissVarQ6Q0C1
PhosPhoSitePlusQ6Q0C1
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A47
DMDM Disease mutations283600
Blocks (Seattle)SLC25A47
SuperfamilyQ6Q0C1
Human Protein AtlasENSG00000140107
Peptide AtlasQ6Q0C1
HPRD16620
IPIIPI00477492   IPI00452583   IPI01025267   
Protein Interaction databases
DIP (DOE-UCLA)Q6Q0C1
IntAct (EBI)Q6Q0C1
FunCoupENSG00000140107
BioGRIDSLC25A47
STRING (EMBL)SLC25A47
ZODIACSLC25A47
Ontologies - Pathways
QuickGOQ6Q0C1
Ontology : AmiGOcarnitine:acyl carnitine antiporter activity  mitochondrial inner membrane  mitochondrial transport  carnitine transmembrane transporter activity  carnitine transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBIcarnitine:acyl carnitine antiporter activity  mitochondrial inner membrane  mitochondrial transport  carnitine transmembrane transporter activity  carnitine transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC25A47
Atlas of Cancer Signalling NetworkSLC25A47
Wikipedia pathwaysSLC25A47
Orthology - Evolution
OrthoDB283600
GeneTree (enSembl)ENSG00000140107
Phylogenetic Trees/Animal Genes : TreeFamSLC25A47
HOVERGENQ6Q0C1
HOGENOMQ6Q0C1
Homologs : HomoloGeneSLC25A47
Homology/Alignments : Family Browser (UCSC)SLC25A47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A47
dbVarSLC25A47
ClinVarSLC25A47
1000_GenomesSLC25A47 
Exome Variant ServerSLC25A47
ExAC (Exome Aggregation Consortium)SLC25A47 (select the gene name)
Genetic variants : HAPMAP283600
Genomic Variants (DGV)SLC25A47 [DGVbeta]
DECIPHERSLC25A47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A47 
Mutations
ICGC Data PortalSLC25A47 
TCGA Data PortalSLC25A47 
Broad Tumor PortalSLC25A47
OASIS PortalSLC25A47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A47
DgiDB (Drug Gene Interaction Database)SLC25A47
DoCM (Curated mutations)SLC25A47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A47 (select a term)
intoGenSLC25A47
Cancer3DSLC25A47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609911   
Orphanet
MedgenSLC25A47
Genetic Testing Registry SLC25A47
NextProtQ6Q0C1 [Medical]
TSGene283600
GENETestsSLC25A47
Target ValidationSLC25A47
Huge Navigator SLC25A47 [HugePedia]
snp3D : Map Gene to Disease283600
BioCentury BCIQSLC25A47
ClinGenSLC25A47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283600
Chemical/Pharm GKB GenePA165479287
Clinical trialSLC25A47
Miscellaneous
canSAR (ICR)SLC25A47 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A47
EVEXSLC25A47
GoPubMedSLC25A47
iHOPSLC25A47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:31:28 CEST 2017

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