Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC25A48 (solute carrier family 25, member 48)

Identity

Alias_namessolute carrier family 25, member 48
Alias_symbol (synonym)FLJ44862
HDMCP
Other alias-
HGNC (Hugo) SLC25A48
LocusID (NCBI) 153328
Atlas_Id 73366
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 135170365 and ends at 135224326 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A48   30451
Cards
Entrez_Gene (NCBI)SLC25A48  153328  solute carrier family 25, member 48
Aliases
GeneCards (Weizmann)SLC25A48
Ensembl hg19 (Hinxton)ENSG00000145832 [Gene_View]  chr5:135170365-135224326 [Contig_View]  SLC25A48 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145832 [Gene_View]  chr5:135170365-135224326 [Contig_View]  SLC25A48 [Vega]
ICGC DataPortalENSG00000145832
TCGA cBioPortalSLC25A48
AceView (NCBI)SLC25A48
Genatlas (Paris)SLC25A48
WikiGenes153328
SOURCE (Princeton)SLC25A48
Genetics Home Reference (NIH)SLC25A48
Genomic and cartography
GoldenPath hg19 (UCSC)SLC25A48  -     chr5:135170365-135224326 +  5q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC25A48  -     5q31.1   [Description]    (hg38-Dec_2013)
EnsemblSLC25A48 - 5q31.1 [CytoView hg19]  SLC25A48 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBISLC25A48 [Mapview hg19]  SLC25A48 [Mapview hg38]
OMIM616150   
Gene and transcription
Genbank (Entrez)AI733049 AK126812 BC025747 BG700532 DA137264
RefSeq transcript (Entrez)NM_145282
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)SLC25A48
Cluster EST : UnigeneHs.720329 [ NCBI ]
CGAP (NCI)Hs.720329
Alternative Splicing GalleryENSG00000145832
Gene ExpressionSLC25A48 [ NCBI-GEO ]   SLC25A48 [ EBI - ARRAY_EXPRESS ]   SLC25A48 [ SEEK ]   SLC25A48 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A48 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153328
GTEX Portal (Tissue expression)SLC25A48
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZT89   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZT89  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZT89
Splice isoforms : SwissVarQ6ZT89
PhosPhoSitePlusQ6ZT89
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mit_carrier    Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A48
DMDM Disease mutations153328
Blocks (Seattle)SLC25A48
SuperfamilyQ6ZT89
Human Protein AtlasENSG00000145832
Peptide AtlasQ6ZT89
HPRD14098
IPIIPI00887587   IPI00444848   IPI00883948   IPI00925970   IPI00966375   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZT89
IntAct (EBI)Q6ZT89
FunCoupENSG00000145832
BioGRIDSLC25A48
STRING (EMBL)SLC25A48
ZODIACSLC25A48
Ontologies - Pathways
QuickGOQ6ZT89
Ontology : AmiGOprotein binding  mitochondrial inner membrane  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIprotein binding  mitochondrial inner membrane  integral component of membrane  transmembrane transport  
NDEx NetworkSLC25A48
Atlas of Cancer Signalling NetworkSLC25A48
Wikipedia pathwaysSLC25A48
Orthology - Evolution
OrthoDB153328
GeneTree (enSembl)ENSG00000145832
Phylogenetic Trees/Animal Genes : TreeFamSLC25A48
HOVERGENQ6ZT89
HOGENOMQ6ZT89
Homologs : HomoloGeneSLC25A48
Homology/Alignments : Family Browser (UCSC)SLC25A48
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A48 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A48
dbVarSLC25A48
ClinVarSLC25A48
1000_GenomesSLC25A48 
Exome Variant ServerSLC25A48
ExAC (Exome Aggregation Consortium)SLC25A48 (select the gene name)
Genetic variants : HAPMAP153328
Genomic Variants (DGV)SLC25A48 [DGVbeta]
DECIPHER (Syndromes)5:135170365-135224326  ENSG00000145832
CONAN: Copy Number AnalysisSLC25A48 
Mutations
ICGC Data PortalSLC25A48 
TCGA Data PortalSLC25A48 
Broad Tumor PortalSLC25A48
OASIS PortalSLC25A48 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC25A48  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC25A48
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A48
DgiDB (Drug Gene Interaction Database)SLC25A48
DoCM (Curated mutations)SLC25A48 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A48 (select a term)
intoGenSLC25A48
Cancer3DSLC25A48(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616150   
Orphanet
MedgenSLC25A48
Genetic Testing Registry SLC25A48
NextProtQ6ZT89 [Medical]
TSGene153328
GENETestsSLC25A48
Huge Navigator SLC25A48 [HugePedia]
snp3D : Map Gene to Disease153328
BioCentury BCIQSLC25A48
ClinGenSLC25A48
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153328
Chemical/Pharm GKB GenePA165660536
Clinical trialSLC25A48
Miscellaneous
canSAR (ICR)SLC25A48 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A48
EVEXSLC25A48
GoPubMedSLC25A48
iHOPSLC25A48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:33 CET 2017

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