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SLC25A53 (solute carrier family 25 member 53)

Identity

Alias_namesMCART6
mitochondrial carrier triple repeat 6
solute carrier family 25, member 53
Other alias
HGNC (Hugo) SLC25A53
LocusID (NCBI) 401612
Atlas_Id 73370
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 104099214 and ends at 104157027 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC25A53 (Xq22.2) / SLC25A53 (Xq22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC25A53   31894
Cards
Entrez_Gene (NCBI)SLC25A53  401612  solute carrier family 25 member 53
AliasesMCART6
GeneCards (Weizmann)SLC25A53
Ensembl hg19 (Hinxton)ENSG00000269743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269743 [Gene_View]  chrX:104099214-104157027 [Contig_View]  SLC25A53 [Vega]
ICGC DataPortalENSG00000269743
TCGA cBioPortalSLC25A53
AceView (NCBI)SLC25A53
Genatlas (Paris)SLC25A53
WikiGenes401612
SOURCE (Princeton)SLC25A53
Genetics Home Reference (NIH)SLC25A53
Genomic and cartography
GoldenPath hg38 (UCSC)SLC25A53  -     chrX:104099214-104157027 -  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC25A53  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblSLC25A53 - Xq22.2 [CytoView hg19]  SLC25A53 - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBISLC25A53 [Mapview hg19]  SLC25A53 [Mapview hg38]
OMIM300941   
Gene and transcription
Genbank (Entrez)AL833609 BC035919 BC140812 BC140814
RefSeq transcript (Entrez)NM_001012755
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC25A53
Cluster EST : UnigeneHs.660022 [ NCBI ]
CGAP (NCI)Hs.660022
Alternative Splicing GalleryENSG00000269743
Gene ExpressionSLC25A53 [ NCBI-GEO ]   SLC25A53 [ EBI - ARRAY_EXPRESS ]   SLC25A53 [ SEEK ]   SLC25A53 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC25A53 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401612
GTEX Portal (Tissue expression)SLC25A53
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9E4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9E4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9E4
Splice isoforms : SwissVarQ5H9E4
PhosPhoSitePlusQ5H9E4
Domaine pattern : Prosite (Expaxy)SOLCAR (PS50920)   
Domains : Interpro (EBI)Mitochondrial_sb/sol_carrier    Mt_carrier_dom   
Domain families : Pfam (Sanger)Mito_carr (PF00153)   
Domain families : Pfam (NCBI)pfam00153   
Conserved Domain (NCBI)SLC25A53
DMDM Disease mutations401612
Blocks (Seattle)SLC25A53
SuperfamilyQ5H9E4
Human Protein AtlasENSG00000269743
Peptide AtlasQ5H9E4
HPRD18628
IPIIPI00376833   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9E4
IntAct (EBI)Q5H9E4
FunCoupENSG00000269743
BioGRIDSLC25A53
STRING (EMBL)SLC25A53
ZODIACSLC25A53
Ontologies - Pathways
QuickGOQ5H9E4
Ontology : AmiGOmitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
Ontology : EGO-EBImitochondrial inner membrane  mitochondrial transport  integral component of membrane  transmembrane transporter activity  transmembrane transport  
NDEx NetworkSLC25A53
Atlas of Cancer Signalling NetworkSLC25A53
Wikipedia pathwaysSLC25A53
Orthology - Evolution
OrthoDB401612
GeneTree (enSembl)ENSG00000269743
Phylogenetic Trees/Animal Genes : TreeFamSLC25A53
HOVERGENQ5H9E4
HOGENOMQ5H9E4
Homologs : HomoloGeneSLC25A53
Homology/Alignments : Family Browser (UCSC)SLC25A53
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC25A53 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC25A53
dbVarSLC25A53
ClinVarSLC25A53
1000_GenomesSLC25A53 
Exome Variant ServerSLC25A53
ExAC (Exome Aggregation Consortium)SLC25A53 (select the gene name)
Genetic variants : HAPMAP401612
Genomic Variants (DGV)SLC25A53 [DGVbeta]
DECIPHERSLC25A53 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC25A53 
Mutations
ICGC Data PortalSLC25A53 
TCGA Data PortalSLC25A53 
Broad Tumor PortalSLC25A53
OASIS PortalSLC25A53 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSLC25A53
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC25A53
DgiDB (Drug Gene Interaction Database)SLC25A53
DoCM (Curated mutations)SLC25A53 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC25A53 (select a term)
intoGenSLC25A53
Cancer3DSLC25A53(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300941   
Orphanet
MedgenSLC25A53
Genetic Testing Registry SLC25A53
NextProtQ5H9E4 [Medical]
TSGene401612
GENETestsSLC25A53
Target ValidationSLC25A53
Huge Navigator SLC25A53 [HugePedia]
snp3D : Map Gene to Disease401612
BioCentury BCIQSLC25A53
ClinGenSLC25A53
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401612
Chemical/Pharm GKB GenePA142671476
Clinical trialSLC25A53
Miscellaneous
canSAR (ICR)SLC25A53 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC25A53
EVEXSLC25A53
GoPubMedSLC25A53
iHOPSLC25A53
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:38:05 CEST 2017

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