Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC26A1 (solute carrier family 26 member 1)

Identity

Alias_namessolute carrier family 26 (sulfate transporter), member 1
solute carrier family 26 (anion exchanger), member 1
Alias_symbol (synonym)SAT-1
EDM4
Other aliasCAON
SAT1
HGNC (Hugo) SLC26A1
LocusID (NCBI) 10861
Atlas_Id 47563
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 987657 and ends at 993440 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNG7 (19p13.3) / SLC26A1 (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC26A1   10993
Cards
Entrez_Gene (NCBI)SLC26A1  10861  solute carrier family 26 member 1
AliasesCAON; EDM4; SAT-1; SAT1
GeneCards (Weizmann)SLC26A1
Ensembl hg19 (Hinxton)ENSG00000145217 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145217 [Gene_View]  chr4:987657-993440 [Contig_View]  SLC26A1 [Vega]
ICGC DataPortalENSG00000145217
TCGA cBioPortalSLC26A1
AceView (NCBI)SLC26A1
Genatlas (Paris)SLC26A1
WikiGenes10861
SOURCE (Princeton)SLC26A1
Genetics Home Reference (NIH)SLC26A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC26A1  -     chr4:987657-993440 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC26A1  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblSLC26A1 - 4p16.3 [CytoView hg19]  SLC26A1 - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBISLC26A1 [Mapview hg19]  SLC26A1 [Mapview hg38]
OMIM167030   610130   
Gene and transcription
Genbank (Entrez)AF297659 AK292747 AY124771 BC015517 BC156322
RefSeq transcript (Entrez)NM_022042 NM_134425 NM_213613
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC26A1
Cluster EST : UnigeneHs.658244 [ NCBI ]
CGAP (NCI)Hs.658244
Alternative Splicing GalleryENSG00000145217
Gene ExpressionSLC26A1 [ NCBI-GEO ]   SLC26A1 [ EBI - ARRAY_EXPRESS ]   SLC26A1 [ SEEK ]   SLC26A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC26A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10861
GTEX Portal (Tissue expression)SLC26A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2B4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2B4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2B4
Splice isoforms : SwissVarQ9H2B4
PhosPhoSitePlusQ9H2B4
Domaine pattern : Prosite (Expaxy)SLC26A (PS01130)    STAS (PS50801)   
Domains : Interpro (EBI)S04_transporter_CS    SLC26A/SulP_dom    SLC26A/SulP_fam    SLC26A1    STAS_dom   
Domain families : Pfam (Sanger)STAS (PF01740)    Sulfate_transp (PF00916)   
Domain families : Pfam (NCBI)pfam01740    pfam00916   
Conserved Domain (NCBI)SLC26A1
DMDM Disease mutations10861
Blocks (Seattle)SLC26A1
SuperfamilyQ9H2B4
Human Protein AtlasENSG00000145217
Peptide AtlasQ9H2B4
HPRD15361
IPIIPI00300852   IPI00651623   IPI00059987   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2B4
IntAct (EBI)Q9H2B4
FunCoupENSG00000145217
BioGRIDSLC26A1
STRING (EMBL)SLC26A1
ZODIACSLC26A1
Ontologies - Pathways
QuickGOQ9H2B4
Ontology : AmiGOchloride channel activity  plasma membrane  integral component of plasma membrane  ion transport  chloride transport  secondary active sulfate transmembrane transporter activity  sulfate transport  bicarbonate transmembrane transporter activity  chloride transmembrane transporter activity  sulfate transmembrane transporter activity  sulfate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  anion:anion antiporter activity  bicarbonate transport  integral component of membrane  basolateral plasma membrane  oxalate transmembrane transporter activity  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  regulation of intracellular pH  sulfate transmembrane transport  chloride transmembrane transport  
Ontology : EGO-EBIchloride channel activity  plasma membrane  integral component of plasma membrane  ion transport  chloride transport  secondary active sulfate transmembrane transporter activity  sulfate transport  bicarbonate transmembrane transporter activity  chloride transmembrane transporter activity  sulfate transmembrane transporter activity  sulfate transmembrane transporter activity  sulfate transmembrane transporter activity  anion:anion antiporter activity  anion:anion antiporter activity  bicarbonate transport  integral component of membrane  basolateral plasma membrane  oxalate transmembrane transporter activity  oxalate transmembrane transporter activity  oxalate transport  regulation of membrane potential  3'-phosphoadenosine 5'-phosphosulfate biosynthetic process  regulation of intracellular pH  sulfate transmembrane transport  chloride transmembrane transport  
NDEx NetworkSLC26A1
Atlas of Cancer Signalling NetworkSLC26A1
Wikipedia pathwaysSLC26A1
Orthology - Evolution
OrthoDB10861
GeneTree (enSembl)ENSG00000145217
Phylogenetic Trees/Animal Genes : TreeFamSLC26A1
HOVERGENQ9H2B4
HOGENOMQ9H2B4
Homologs : HomoloGeneSLC26A1
Homology/Alignments : Family Browser (UCSC)SLC26A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC26A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC26A1
dbVarSLC26A1
ClinVarSLC26A1
1000_GenomesSLC26A1 
Exome Variant ServerSLC26A1
ExAC (Exome Aggregation Consortium)SLC26A1 (select the gene name)
Genetic variants : HAPMAP10861
Genomic Variants (DGV)SLC26A1 [DGVbeta]
DECIPHERSLC26A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC26A1 
Mutations
ICGC Data PortalSLC26A1 
TCGA Data PortalSLC26A1 
Broad Tumor PortalSLC26A1
OASIS PortalSLC26A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC26A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC26A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC26A1
DgiDB (Drug Gene Interaction Database)SLC26A1
DoCM (Curated mutations)SLC26A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC26A1 (select a term)
intoGenSLC26A1
Cancer3DSLC26A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM167030    610130   
Orphanet
MedgenSLC26A1
Genetic Testing Registry SLC26A1
NextProtQ9H2B4 [Medical]
TSGene10861
GENETestsSLC26A1
Target ValidationSLC26A1
Huge Navigator SLC26A1 [HugePedia]
snp3D : Map Gene to Disease10861
BioCentury BCIQSLC26A1
ClinGenSLC26A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10861
Chemical/Pharm GKB GenePA400
Clinical trialSLC26A1
Miscellaneous
canSAR (ICR)SLC26A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC26A1
EVEXSLC26A1
GoPubMedSLC26A1
iHOPSLC26A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:55:56 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.